The 2.0 version of rSNPBase

Variant report

Variant rs56232484
Chromosome Location chr1:212299372-212299373
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:212274200-212301600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr1:212274400-212308200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
3 chr1:212280000-212299600 Weak transcription HUES6 Cell Line embryonic stem cell
4 chr1:212281200-212308400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
5 chr1:212283800-212300400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
6 chr1:212284400-212300400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
7 chr1:212285000-212303200 Weak transcription Fetal Stomach stomach
8 chr1:212285400-212299600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
9 chr1:212285600-212311200 Weak transcription Hela-S3 cervix
10 chr1:212287400-212320600 Weak transcription A549 lung
11 chr1:212292600-212314600 Weak transcription Thymus Thymus
12 chr1:212293000-212300400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
13 chr1:212293200-212299600 Weak transcription Spleen Spleen
14 chr1:212293200-212313200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
15 chr1:212295400-212303800 Weak transcription K562 blood
16 chr1:212297800-212299400 Enhancers Primary B cells from cord blood blood
17 chr1:212297800-212299800 Enhancers Duodenum Mucosa Duodenum
18 chr1:212298000-212302400 Enhancers Primary neutrophils fromperipheralblood blood
19 chr1:212298200-212299400 Enhancers Primary monocytes fromperipheralblood blood
20 chr1:212298200-212300000 Enhancers Rectal Mucosa Donor 31 rectum
21 chr1:212298200-212307200 Strong transcription Dnd41 blood
22 chr1:212298400-212299600 Weak transcription Sigmoid Colon Sigmoid Colon
23 chr1:212298400-212301000 Enhancers iPS-18 Cell Line embryonic stem cell
24 chr1:212298600-212299600 Weak transcription H1 Cell Line embryonic stem cell
25 chr1:212298600-212303400 Weak transcription Fetal Intestine Small intestine
26 chr1:212298600-212305600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
27 chr1:212298600-212306200 Weak transcription H9 Cell Line embryonic stem cell
28 chr1:212298600-212312200 Weak transcription Gastric stomach
29 chr1:212298800-212300600 Weak transcription Cortex derived primary cultured neurospheres brain
30 chr1:212298800-212301200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
31 chr1:212298800-212308200 Weak transcription Fetal Muscle Trunk muscle
32 chr1:212299000-212299800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
33 chr1:212299000-212299800 Enhancers Monocytes-CD14+_RO01746 blood
34 chr1:212299000-212305200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
35 chr1:212299000-212308000 Weak transcription Primary hematopoietic stem cells blood
36 chr1:212299000-212313000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
37 chr1:212299200-212302000 Weak transcription Primary T cells from cord blood blood
38 chr1:212299200-212305000 Weak transcription Primary hematopoietic stem cells short term culture blood
39 chr1:212299200-212305000 Weak transcription Fetal Thymus thymus
40 chr1:212299200-212307800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
41 chr1:212299200-212314200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast

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Last update: Aug 31, 2015