Variant report

Variant	rs56233205
Chromosome Location	chr3:99821679-99821680
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:99781468..99783579-chr3:99820252..99822252,2	MCF-7	breast:
2	chr3:99816959..99818663-chr3:99819908..99821775,2	K562	blood:
3	chr3:99820099..99823148-chr3:99826094..99828977,3	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13320057	1.00[ASN][1000 genomes]
rs13323916	1.00[ASN][1000 genomes]
rs35777905	1.00[ASN][1000 genomes]
rs73138610	1.00[ASN][1000 genomes]
rs9874884	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817478	chr3:99474086-99955548	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv916476	chr3:99478229-100124625	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv869848	chr3:99652246-99904276	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv932634	chr3:99660690-99888854	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1010579	chr3:99660754-99901817	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1008483	chr3:99660754-99903769	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1010897	chr3:99660754-99904783	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
8	nsv1001529	chr3:99661758-99892654	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
9	nsv536665	chr3:99661758-99892654	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
10	nsv591148	chr3:99774720-99905803	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99795800-99866600	Weak transcription	Primary T cells from cord blood	blood
2	chr3:99809200-99823000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:99809200-99824400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr3:99809600-99822000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:99809800-99822000	Weak transcription	Left Ventricle	heart
6	chr3:99809800-99822400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:99809800-99824400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr3:99813000-99823000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:99813000-99823600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr3:99815200-99823000	Weak transcription	Brain Angular Gyrus	brain
11	chr3:99816000-99822800	Weak transcription	Right Atrium	heart
12	chr3:99816000-99823000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr3:99817000-99822800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr3:99817000-99822800	Weak transcription	Brain Hippocampus Middle	brain
15	chr3:99817200-99822000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr3:99817200-99823000	Weak transcription	Brain Substantia Nigra	brain
17	chr3:99817200-99824000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr3:99817400-99822800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr3:99817400-99822800	Weak transcription	Brain Anterior Caudate	brain
20	chr3:99817400-99822800	Weak transcription	Small Intestine	intestine
21	chr3:99817600-99821800	Weak transcription	Right Ventricle	heart
22	chr3:99817600-99821800	Weak transcription	Stomach Smooth Muscle	stomach
23	chr3:99817600-99822800	Weak transcription	Rectal Smooth Muscle	rectum
24	chr3:99817600-99823400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr3:99817600-99825000	Weak transcription	Placenta	Placenta
26	chr3:99817800-99822000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr3:99817800-99822000	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr3:99817800-99823400	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr3:99818000-99823000	Weak transcription	Colon Smooth Muscle	Colon
30	chr3:99818000-99824200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr3:99818000-99836600	Weak transcription	Primary B cells from cord blood	blood
32	chr3:99818200-99821800	Weak transcription	Liver	Liver
33	chr3:99818200-99821800	Weak transcription	Fetal Lung	lung
34	chr3:99818200-99822600	Weak transcription	Stomach Mucosa	stomach
35	chr3:99818800-99822800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr3:99818800-99822800	Weak transcription	Fetal Intestine Large	intestine
37	chr3:99819000-99822000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr3:99819200-99822000	Weak transcription	Lung	lung
39	chr3:99819400-99821800	Weak transcription	Fetal Heart	heart
40	chr3:99819400-99822000	Weak transcription	Ovary	ovary
41	chr3:99819400-99822800	Weak transcription	Esophagus	oesophagus
42	chr3:99819400-99822800	Weak transcription	HSMM	muscle
43	chr3:99819800-99822200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr3:99819800-99822800	Weak transcription	NHDF-Ad	bronchial
45	chr3:99820000-99822600	Weak transcription	NH-A	brain
46	chr3:99820200-99821800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr3:99820200-99821800	Weak transcription	Osteobl	bone
48	chr3:99820200-99822400	Weak transcription	NHLF	lung
49	chr3:99820200-99822800	Weak transcription	Fetal Intestine Small	intestine
50	chr3:99820200-99823000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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