Variant report

Variant rs56234500
Chromosome Location chr5:59041440-59041441
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:47 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:59028000-59043200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
2 chr5:59036800-59041600 Enhancers Hela-S3 cervix
3 chr5:59039400-59042600 Enhancers HMEC breast
4 chr5:59039400-59059800 Weak transcription Primary B cells from cord blood blood
5 chr5:59039600-59043000 Enhancers HUVEC blood vessel
6 chr5:59039800-59042600 Enhancers Rectal Smooth Muscle rectum
7 chr5:59039800-59042600 Enhancers NH-A brain
8 chr5:59040000-59042800 Enhancers HSMM muscle
9 chr5:59040200-59041600 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
10 chr5:59040200-59042600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
11 chr5:59040400-59041600 Enhancers Brain Substantia Nigra brain
12 chr5:59040400-59043400 Enhancers Colon Smooth Muscle Colon
13 chr5:59040800-59041600 Flanking Active TSS NHEK skin
14 chr5:59040800-59042200 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
15 chr5:59040800-59042200 Enhancers Fetal Stomach stomach
16 chr5:59041000-59041600 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
17 chr5:59041000-59041600 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
18 chr5:59041000-59041600 Flanking Active TSS Skeletal Muscle Male skeletal muscle
19 chr5:59041000-59042800 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
20 chr5:59041000-59043400 Enhancers Fetal Brain Male brain
21 chr5:59041000-59047000 Weak transcription Fetal Intestine Small intestine
22 chr5:59041200-59041600 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
23 chr5:59041200-59041600 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
24 chr5:59041200-59041600 Flanking Active TSS Adipose Nuclei Adipose
25 chr5:59041200-59041600 Enhancers Liver Liver
26 chr5:59041200-59041600 Flanking Active TSS Brain Germinal Matrix brain
27 chr5:59041200-59041600 Enhancers Duodenum Smooth Muscle Duodenum
28 chr5:59041200-59041600 Flanking Active TSS Fetal Brain Female brain
29 chr5:59041200-59041600 Active TSS Fetal Lung lung
30 chr5:59041200-59041600 Enhancers Right Atrium heart
31 chr5:59041200-59041600 Flanking Active TSS Skeletal Muscle Female skeletal muscle
32 chr5:59041200-59041600 Flanking Active TSS Stomach Smooth Muscle stomach
33 chr5:59041200-59041800 Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
34 chr5:59041200-59042200 Enhancers Osteobl bone
35 chr5:59041200-59042600 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
36 chr5:59041200-59042600 Enhancers Fetal Muscle Leg muscle
37 chr5:59041200-59042800 Enhancers Muscle Satellite Cultured Cells --
38 chr5:59041400-59041600 Flanking Active TSS Brain Hippocampus Middle brain
39 chr5:59041400-59041600 Enhancers Pancreatic Islets Pancreatic Islet
40 chr5:59041400-59041600 Enhancers Left Ventricle heart
41 chr5:59041400-59041600 Flanking Active TSS A549 lung
42 chr5:59041400-59041600 Flanking Active TSS HSMMtube muscle
43 chr5:59041400-59042200 Weak transcription NHDF-Ad bronchial
44 chr5:59041400-59042400 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
45 chr5:59041400-59042400 Weak transcription Brain Cingulate Gyrus brain
46 chr5:59041400-59042600 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
47 chr5:59041400-59042600 Enhancers Placenta Amnion Placenta Amnion

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