Variant report

Variant	rs562369900
Chromosome Location	chr1:9516048-9516049
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:9348801..9349827-chr1:9515579..9516476,3	MCF-7	breast:
2	chr1:9327129..9327987-chr1:9515708..9516447,4	MCF-7	breast:
3	chr1:9348687..9350674-chr1:9515546..9516674,10	K562	blood:
4	chr1:9514768..9516687-chr1:9535496..9537861,2	K562	blood:
5	chr1:9240772..9242777-chr1:9514461..9516821,2	MCF-7	breast:
6	chr1:9488345..9489032-chr1:9515535..9516441,2	MCF-7	breast:
7	chr1:9348944..9349770-chr1:9515392..9516454,4	MCF-7	breast:
8	chr1:9351244..9353972-chr1:9515955..9518438,2	K562	blood:
9	chr1:9351639..9354409-chr1:9515006..9516561,2	MCF-7	breast:
10	chr1:9509075..9510677-chr1:9515840..9518689,2	K562	blood:
11	chr1:9327007..9327925-chr1:9515435..9516474,10	K562	blood:
12	chr1:9327410..9330706-chr1:9514370..9517487,3	K562	blood:
13	chr1:9515559..9516391-chr1:9551186..9551706,2	MCF-7	breast:
14	chr1:9294295..9295128-chr1:9515563..9516080,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000049239	Chromatin interaction
ENSG00000171621	Chromatin interaction
ENSG00000234546	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931984	chr1:8879337-9694749	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	570 gene(s)	inside rSNPs	diseases
2	esv3385337	chr1:9105242-10082223	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	549 gene(s)	inside rSNPs	diseases
3	nsv1003190	chr1:9382452-9554553	Genic enhancers Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv534850	chr1:9382452-9554553	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1013224	chr1:9441040-9699768	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
6	nsv1014975	chr1:9462254-9517118	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv534851	chr1:9462254-9517118	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv464283	chr1:9495571-9677853	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
9	nsv545363	chr1:9495571-9677853	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
10	nsv517755	chr1:9514846-9539693	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:9512200-9516400	Enhancers	Fetal Muscle Leg	muscle
2	chr1:9512400-9516400	Enhancers	Pancreas	Pancrea
3	chr1:9512600-9516200	Enhancers	Ovary	ovary
4	chr1:9513800-9516200	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr1:9513800-9519800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr1:9513800-9533000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr1:9514000-9516200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr1:9514000-9516400	Enhancers	Adipose Nuclei	Adipose
9	chr1:9514200-9519400	Weak transcription	Esophagus	oesophagus
10	chr1:9514600-9516400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
11	chr1:9514800-9516600	Enhancers	Liver	Liver
12	chr1:9515200-9516200	Enhancers	Fetal Stomach	stomach
13	chr1:9515400-9516200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr1:9515400-9516400	Enhancers	Dnd41	blood
15	chr1:9515600-9516200	Enhancers	Fetal Intestine Small	intestine
16	chr1:9515600-9517000	Enhancers	Fetal Thymus	thymus
17	chr1:9515600-9519800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr1:9515800-9516200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr1:9515800-9516200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr1:9515800-9516200	Enhancers	Brain Anterior Caudate	brain
21	chr1:9515800-9516200	Enhancers	Brain Hippocampus Middle	brain
22	chr1:9515800-9516200	Enhancers	Fetal Lung	lung
23	chr1:9515800-9516200	Enhancers	Stomach Mucosa	stomach
24	chr1:9515800-9516200	Flanking Active TSS	Stomach Smooth Muscle	stomach
25	chr1:9515800-9516400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr1:9515800-9516400	Enhancers	Fetal Intestine Large	intestine
27	chr1:9515800-9516400	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr1:9516000-9516200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr1:9516000-9516200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr1:9516000-9516200	Enhancers	Brain Substantia Nigra	brain
31	chr1:9516000-9516200	Enhancers	Duodenum Smooth Muscle	Duodenum
32	chr1:9516000-9516400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr1:9516000-9516400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr1:9516000-9516400	Bivalent Enhancer	HepG2	liver

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