Variant report

Variant	rs56237802
Chromosome Location	chr12:120771983-120771984
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:120769968..120772533-chr12:120880637..120882245,2	MCF-7	breast:
2	chr12:120728111..120731596-chr12:120769746..120773066,4	MCF-7	breast:
3	chr12:120753886..120756073-chr12:120770062..120773439,3	MCF-7	breast:
4	chr12:120728653..120730426-chr12:120770382..120773343,2	MCF-7	breast:
5	chr12:120729774..120732579-chr12:120768801..120772548,3	K562	blood:
6	chr12:120769575..120771391-chr12:120771814..120774515,3	K562	blood:
7	chr12:120768949..120771391-chr12:120771814..120774934,3	K562	blood:
8	chr12:120771969..120773509-chr12:120874917..120877639,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000200795	Chromatin interaction
ENSG00000111780	Chromatin interaction
ENSG00000202538	Chromatin interaction
ENSG00000111775	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12299143	0.83[ASN][1000 genomes]
rs12423303	0.88[ASN][1000 genomes]
rs12424233	0.93[ASN][1000 genomes]
rs12424555	0.86[ASN][1000 genomes]
rs12425936	0.91[ASN][1000 genomes]
rs12426900	0.91[ASN][1000 genomes]
rs12427069	0.88[ASN][1000 genomes]
rs12427095	0.91[ASN][1000 genomes]
rs16950058	0.86[ASN][1000 genomes]
rs16950061	0.86[ASN][1000 genomes]
rs16950065	0.86[ASN][1000 genomes]
rs16950101	0.93[ASN][1000 genomes]
rs2238158	0.91[ASN][1000 genomes]
rs2238161	0.91[ASN][1000 genomes]
rs2522140	0.80[ASN][1000 genomes]
rs2701643	0.86[ASN][1000 genomes]
rs3898618	0.93[ASN][1000 genomes]
rs5634	0.86[ASN][1000 genomes]
rs56733641	0.91[ASN][1000 genomes]
rs57141366	0.93[ASN][1000 genomes]
rs57279831	0.93[ASN][1000 genomes]
rs57384430	0.86[ASN][1000 genomes]
rs58232894	0.91[ASN][1000 genomes]
rs59768240	0.93[ASN][1000 genomes]
rs60176939	0.85[ASN][1000 genomes]
rs61592165	0.93[ASN][1000 genomes]
rs61665022	0.86[ASN][1000 genomes]
rs61748115	0.86[ASN][1000 genomes]
rs7960401	0.86[ASN][1000 genomes]
rs7977875	0.88[ASN][1000 genomes]
rs9657936	0.86[ASN][1000 genomes]
rs9657937	0.85[ASN][1000 genomes]
rs9657941	0.86[ASN][1000 genomes]
rs9657942	0.86[ASN][1000 genomes]
rs9657948	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899555	chr12:120519124-120840522	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	499 gene(s)	inside rSNPs	diseases
2	nsv1035698	chr12:120645330-120777580	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	436 gene(s)	inside rSNPs	diseases
3	nsv1047447	chr12:120645330-120808621	Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	436 gene(s)	inside rSNPs	diseases
4	nsv899556	chr12:120695141-120779931	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	433 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120764000-120773800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:120764000-120783800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr12:120764000-120799200	Weak transcription	Right Atrium	heart
4	chr12:120766200-120779200	Weak transcription	Liver	Liver
5	chr12:120769400-120785000	Weak transcription	Gastric	stomach

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