Variant report

Variant	rs562406134
Chromosome Location	chr4:158555521-158555522
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr4:158555507-158555557	HUVEC	blood vessel:	n/a
2	chr4:158555507-158555557	AG04450	lung:	fetal
3	chr4:158555507-158555557	Caco-2	colon:	n/a
4	chr4:158555507-158555557	HEK293	kidney:	embryo
5	chr4:158555507-158555557	GM06990	blood:	n/a
6	chr4:158555507-158555557	LNCaP	prostate:	n/a
7	chr4:158555507-158555557	PFSK-1	brain:	n/a
8	chr4:158555507-158555557	HEEpiC	esophagus:	n/a
9	chr4:158555507-158555557	NT2-D1	testis:	n/a
10	chr4:158555507-158555557	Hepatocyte	liver:	n/a
11	chr4:158555507-158555557	Hela-S3	cervix:	n/a
12	chr4:158555507-158555557	HAEpiC	amniotic membrane:	n/a
13	chr4:158555507-158555557	RPTEC	kidney:	n/a
14	chr4:158555507-158555557	MCF-7	breast:	n/a
15	chr4:158555507-158555557	GM12892	blood:	n/a
16	chr4:158555507-158555557	SK-N-MC	brain:	n/a
17	chr4:158555507-158555557	A549	lung:	n/a
18	chr4:158555507-158555557	GM19239	blood:	n/a
19	chr4:158555507-158555557	HNPCEpiC	eye:	n/a
20	chr4:158555507-158555557	T-47D	breast:	n/a
21	chr4:158555507-158555557	HIPEpiC	eye:	n/a
22	chr4:158555507-158555557	MCF10A-Er-Src	breast:	n/a
23	chr4:158555507-158555557	NHDF-neo	bronchial:	n/a
24	chr4:158555507-158555557	K562	blood:	n/a
25	chr4:158555507-158555557	HCT-116	colon:	n/a
26	chr4:158555507-158555557	Jurkat	blood:	n/a
27	chr4:158555507-158555557	HRE	kidney:	n/a
28	chr4:158555507-158555557	SK-N-SH	brain:	n/a
29	chr4:158555507-158555557	GM12878	blood:	n/a
30	chr4:158555507-158555557	H1-hESC	embryonic stem cell:	embryo
31	chr4:158555507-158555557	PrEC	prostate:	n/a
32	chr4:158555507-158555557	AG04449	skin:	fetal
33	chr4:158555507-158555557	IMR90	lung:	fetal
34	chr4:158555507-158555557	SKMC	muscle:	n/a
35	chr4:158555507-158555557	SK-N-SH_RA	brain:	n/a
36	chr4:158555507-158555557	AoSMC	blood vessel:	n/a
37	chr4:158555507-158555557	HCM	heart:	n/a
38	chr4:158555507-158555557	HCF	heart:	n/a
39	chr4:158555507-158555557	U87	brain:	n/a
40	chr4:158555507-158555557	ProgFib	skin:	n/a
41	chr4:158555507-158555557	HepG2	liver:	n/a
42	chr4:158555507-158555557	HCPEpiC	choroid plexus:	n/a
43	chr4:158555507-158555557	HL-60	blood:	n/a
44	chr4:158555507-158555557	HRPEpiC	eye:	n/a
45	chr4:158555507-158555557	BE2_C	brain:	n/a
46	chr4:158555507-158555557	AG09319	gingival:	n/a
47	chr4:158555507-158555557	ovcar-3	ovarian:	n/a
48	chr4:158555507-158555557	PANC-1	pancreas:	n/a
49	chr4:158555507-158555557	NH-A	brain:	n/a
50	chr4:158555507-158555557	HPAEpiC	pulmonary alveolar:	n/a

No data

Variant related genes	Relation type
ENSG00000249275	CpG island

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020294	chr4:157722712-158691771	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv537313	chr4:157722712-158691771	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1018387	chr4:157959931-158764190	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv595805	chr4:158535671-158564280	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
5	nsv461695	chr4:158540375-158564280	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
6	nsv595806	chr4:158540375-158564280	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
7	nsv880461	chr4:158540375-158570410	Inactive region	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv881105	chr4:158541687-158570410	Inactive region	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv880680	chr4:158546648-158576701	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv1024128	chr4:158549747-158561859	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
11	nsv470086	chr4:158550241-158579066	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv437448	chr4:158550319-158597491	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv993476	chr4:158550643-159202015	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
14	nsv1025774	chr4:158550949-158561859	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
15	nsv1026954	chr4:158551136-158594600	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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