Variant report

Variant	rs56241325
Chromosome Location	chr2:33906697-33906698
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1868349	0.83[AFR][1000 genomes]
rs60960075	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350238	chr2:33849408-33979026	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33905800-33907800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr2:33906000-33906800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr2:33906000-33906800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr2:33906000-33907000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr2:33906200-33906800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr2:33906200-33906800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr2:33906200-33907000	Enhancers	Adipose Nuclei	Adipose
8	chr2:33906400-33906800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr2:33906400-33906800	Active TSS	Brain Substantia Nigra	brain
10	chr2:33906400-33906800	Enhancers	Fetal Kidney	kidney
11	chr2:33906600-33906800	Enhancers	Brain Cingulate Gyrus	brain
12	chr2:33906600-33907000	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr2:33906600-33907000	Enhancers	Brain Angular Gyrus	brain
14	chr2:33906600-33907200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr2:33906600-33907400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr2:33906600-33907400	Enhancers	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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