The 2.0 version of rSNPBase

Variant report

Variant rs562417580
Chromosome Location chr8:38887978-38887979
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:110 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr8:38856600-38889600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr8:38856800-38889600 Weak transcription Colonic Mucosa Colon
3 chr8:38865000-38889600 Weak transcription iPS-15b Cell Line embryonic stem cell
4 chr8:38865400-38888800 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
5 chr8:38865600-38888200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
6 chr8:38865600-38889000 Strong transcription Primary monocytes fromperipheralblood blood
7 chr8:38866000-38888400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
8 chr8:38869600-38902800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
9 chr8:38869800-38888400 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
10 chr8:38872000-38890400 Strong transcription Breast Myoepithelial Primary Cells Breast
11 chr8:38872400-38888200 Strong transcription Fetal Intestine Large intestine
12 chr8:38872600-38889600 Weak transcription Pancreatic Islets Pancreatic Islet
13 chr8:38872600-38889800 Weak transcription Primary B cells from peripheral blood blood
14 chr8:38872800-38888000 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
15 chr8:38874400-38888800 Strong transcription Hela-S3 cervix
16 chr8:38875000-38888400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
17 chr8:38875200-38888800 Strong transcription Monocytes-CD14+_RO01746 blood
18 chr8:38875400-38889400 Weak transcription Esophagus oesophagus
19 chr8:38875400-38890200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
20 chr8:38875800-38895400 Weak transcription Brain Angular Gyrus brain
21 chr8:38876400-38888000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
22 chr8:38876600-38888000 Strong transcription Placenta Placenta
23 chr8:38878600-38888600 Strong transcription Dnd41 blood
24 chr8:38879000-38888000 Strong transcription HUES6 Cell Line embryonic stem cell
25 chr8:38879000-38888400 Strong transcription iPS-20b Cell Line embryonic stem cell
26 chr8:38879200-38888000 Strong transcription Duodenum Smooth Muscle Duodenum
27 chr8:38879200-38888400 Strong transcription Cortex derived primary cultured neurospheres brain
28 chr8:38879800-38888000 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
29 chr8:38880200-38888000 Strong transcription Sigmoid Colon Sigmoid Colon
30 chr8:38880600-38888000 Strong transcription Duodenum Mucosa Duodenum
31 chr8:38880600-38888200 Strong transcription GM12878-XiMat blood
32 chr8:38881200-38888000 Strong transcription NHEK skin
33 chr8:38882000-38913600 Weak transcription Fetal Kidney kidney
34 chr8:38882400-38889600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
35 chr8:38882800-38895000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
36 chr8:38882800-38895000 Weak transcription Rectal Smooth Muscle rectum
37 chr8:38883000-38889600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
38 chr8:38883000-38889600 Weak transcription Lung lung
39 chr8:38883000-38895000 Weak transcription Spleen Spleen
40 chr8:38883000-38913000 Weak transcription Rectal Mucosa Donor 29 rectum
41 chr8:38883200-38889800 Weak transcription Fetal Intestine Small intestine
42 chr8:38883600-38888400 Strong transcription Primary B cells from cord blood blood
43 chr8:38883600-38889800 Weak transcription Right Ventricle heart
44 chr8:38883800-38888400 Weak transcription Brain Germinal Matrix brain
45 chr8:38884000-38888000 Strong transcription Primary hematopoietic stem cells blood
46 chr8:38884000-38888400 Genic enhancers NHLF lung
47 chr8:38884200-38888400 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
48 chr8:38884600-38888200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
49 chr8:38885000-38888600 Strong transcription NH-A brain
50 chr8:38885000-38895400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain

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Last update: Aug 31, 2015