Variant report

Variant	rs562442905
Chromosome Location	chr2:99543201-99543202
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011278	chr2:99280928-99638376	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535835	chr2:99280928-99638376	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv582518	chr2:99498774-99546355	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv874697	chr2:99520608-99558970	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv834310	chr2:99533832-99709999	Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
6	nsv1007718	chr2:99542281-99729107	Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:99538000-99550800	Weak transcription	Gastric	stomach
2	chr2:99538400-99551400	Weak transcription	Esophagus	oesophagus
3	chr2:99542600-99543400	Enhancers	NHEK	skin
4	chr2:99542600-99543800	Enhancers	HMEC	breast
5	chr2:99542800-99543400	Enhancers	Brain Germinal Matrix	brain
6	chr2:99542800-99543600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr2:99542800-99543600	Enhancers	A549	lung
8	chr2:99542800-99543600	Enhancers	NH-A	brain
9	chr2:99542800-99543600	Enhancers	Osteobl	bone
10	chr2:99542800-99543800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr2:99542800-99543800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr2:99542800-99543800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr2:99542800-99543800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr2:99542800-99543800	Enhancers	Pancreas	Pancrea
15	chr2:99542800-99544000	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr2:99542800-99545000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr2:99543000-99543400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr2:99543000-99544200	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr2:99543000-99548200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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