Variant report

Variant	rs562447442
Chromosome Location	chr11:36336126-36336127
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	esv32924	chr11:36336072-36336295	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36332000-36338600	Weak transcription	Gastric	stomach
2	chr11:36332800-36336400	Enhancers	Sigmoid Colon	Sigmoid Colon
3	chr11:36333600-36336400	Enhancers	Fetal Intestine Large	intestine
4	chr11:36333800-36336200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:36333800-36336200	Enhancers	HSMMtube	muscle
6	chr11:36333800-36336400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:36333800-36336800	Enhancers	Fetal Intestine Small	intestine
8	chr11:36333800-36337200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr11:36334000-36336600	Enhancers	Ovary	ovary
10	chr11:36334200-36339800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr11:36334800-36336200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr11:36335000-36336200	Enhancers	Fetal Kidney	kidney
13	chr11:36335000-36337200	Enhancers	Brain Substantia Nigra	brain
14	chr11:36335000-36338000	Enhancers	Adipose Nuclei	Adipose
15	chr11:36335200-36336200	Enhancers	Brain Angular Gyrus	brain
16	chr11:36335200-36336200	Enhancers	Rectal Mucosa Donor 29	rectum
17	chr11:36335200-36339600	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr11:36335400-36336200	Enhancers	Pancreatic Islets	Pancreatic Islet
19	chr11:36335400-36336200	Enhancers	Pancreas	Pancrea
20	chr11:36335400-36340200	Weak transcription	Brain Cingulate Gyrus	brain
21	chr11:36335600-36339200	Weak transcription	Colonic Mucosa	Colon
22	chr11:36335800-36336200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr11:36335800-36336200	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr11:36335800-36337000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr11:36336000-36336200	Bivalent Enhancer	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr11:36336000-36337800	Enhancers	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links