Variant report

Variant	rs562449829
Chromosome Location	chr12:105368988-105368989
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:105367392..105369569-chr12:105378392..105380770,2	MCF-7	breast:
2	chr12:105368507..105370397-chr12:105372355..105374469,3	MCF-7	breast:
3	chr12:105368926..105370513-chr12:105372160..105373896,2	MCF-7	breast:
4	chr12:105350976..105355078-chr12:105366279..105369986,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151131	Chromatin interaction
ENSG00000136052	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899495	chr12:104990469-105527011	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv899498	chr12:105173598-105461620	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases
3	nsv832505	chr12:105315352-105497765	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv869	chr12:105363425-105394904	Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
5	nsv983361	chr12:105367672-105376203	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv3436359	chr12:105367822-105372020	Weak transcription Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	esv3498330	chr12:105368622-105373520	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv511501	chr12:105368694-105374137	Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	esv8886	chr12:105368815-105373770	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	esv3498352	chr12:105368932-105373639	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	esv3498363	chr12:105368974-105373613	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	esv3498341	chr12:105368976-105373617	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105368000-105369000	Enhancers	Stomach Mucosa	stomach
2	chr12:105368000-105370800	Enhancers	HMEC	breast
3	chr12:105368000-105371800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr12:105368000-105371800	Enhancers	Primary B cells from peripheral blood	blood
5	chr12:105368200-105369000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr12:105368200-105369000	Enhancers	Adipose Nuclei	Adipose
7	chr12:105368200-105369000	Flanking Active TSS	GM12878-XiMat	blood
8	chr12:105368200-105369000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr12:105368200-105370000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr12:105368200-105370200	Enhancers	Hela-S3	cervix
11	chr12:105368200-105372000	Enhancers	Primary B cells from cord blood	blood
12	chr12:105368400-105369800	Enhancers	Osteobl	bone
13	chr12:105368400-105370200	Enhancers	NHDF-Ad	bronchial
14	chr12:105368400-105370400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr12:105368400-105370800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr12:105368600-105370000	Enhancers	Muscle Satellite Cultured Cells	--
17	chr12:105368600-105370200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr12:105368600-105370200	Enhancers	HSMM	muscle
19	chr12:105368600-105370400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr12:105368600-105370600	Weak transcription	Placenta	Placenta
21	chr12:105368800-105369400	Weak transcription	NHLF	lung
22	chr12:105368800-105369600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr12:105368800-105369800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr12:105368800-105370400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr12:105368800-105370400	Enhancers	NHEK	skin

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