Variant report

Variant	rs56245772
Chromosome Location	chr16:71897735-71897736
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:71894255..71897877-chr16:71898217..71900097,3	K562	blood:
2	chr16:71896567..71899503-chr16:71901717..71904863,3	K562	blood:
3	chr16:71896461..71898356-chr16:72125700..72128609,2	MCF-7	breast:
4	chr16:71892735..71894554-chr16:71896210..71898034,2	K562	blood:

Variant related genes	Relation type
ENSG00000140829	Chromatin interaction
ENSG00000140830	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs35543251	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv948468	chr16:71727571-72651914	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71881000-71902200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr16:71881200-71916600	Weak transcription	Small Intestine	intestine
3	chr16:71881800-71899000	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr16:71881800-71902000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr16:71881800-71904600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr16:71881800-71914400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr16:71881800-71914600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr16:71882000-71903800	Strong transcription	Brain Germinal Matrix	brain
9	chr16:71882000-71915600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr16:71882400-71902400	Strong transcription	Fetal Stomach	stomach
11	chr16:71882400-71914600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr16:71884600-71902000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr16:71885200-71912800	Weak transcription	NHDF-Ad	bronchial
14	chr16:71885600-71898000	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr16:71885600-71916600	Weak transcription	Stomach Mucosa	stomach
16	chr16:71886000-71898400	Weak transcription	HMEC	breast
17	chr16:71886400-71904200	Strong transcription	Fetal Muscle Trunk	muscle
18	chr16:71886400-71904600	Strong transcription	Fetal Brain Female	brain
19	chr16:71888000-71914800	Weak transcription	HUVEC	blood vessel
20	chr16:71888000-71916400	Weak transcription	NHEK	skin
21	chr16:71888200-71910600	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr16:71888400-71903000	Weak transcription	K562	blood
23	chr16:71888600-71903800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr16:71889200-71904000	Strong transcription	Primary T cells from cord blood	blood
25	chr16:71889600-71900200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr16:71890000-71899200	Strong transcription	Primary neutrophils fromperipheralblood	blood
27	chr16:71890200-71913000	Weak transcription	Osteobl	bone
28	chr16:71890400-71897800	Weak transcription	Psoas Muscle	Psoas
29	chr16:71890600-71899600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr16:71890800-71898000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr16:71890800-71898400	Weak transcription	Right Atrium	heart
32	chr16:71891000-71898000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr16:71891000-71914000	Strong transcription	Primary B cells from peripheral blood	blood
34	chr16:71891400-71899800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr16:71891400-71905400	Strong transcription	Fetal Lung	lung
36	chr16:71891400-71906600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr16:71892000-71902000	Strong transcription	HUES6 Cell Line	embryonic stem cell
38	chr16:71892000-71903400	Strong transcription	Primary T helper cells fromperipheralblood	blood
39	chr16:71892200-71898200	Weak transcription	HSMM	muscle
40	chr16:71892200-71898800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr16:71892200-71899000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr16:71892200-71900400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr16:71892200-71901000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
44	chr16:71892400-71901800	Strong transcription	Fetal Muscle Leg	muscle
45	chr16:71892600-71901800	Strong transcription	Cortex derived primary cultured neurospheres	brain
46	chr16:71892600-71904400	Strong transcription	Primary T helper cells PMA-I stimulated	--
47	chr16:71892800-71899400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr16:71892800-71899400	Strong transcription	Placenta	Placenta
49	chr16:71892800-71899600	Strong transcription	Brain Hippocampus Middle	brain
50	chr16:71892800-71899600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain

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