Variant report

Variant	rs562466078
Chromosome Location	chr15:60417384-60417385
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833028	chr15:60227565-60418112	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3400620	chr15:60417378-60417909	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60412600-60419400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr15:60412600-60419400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr15:60413000-60419400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr15:60414400-60419400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr15:60414600-60419400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr15:60415000-60419400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr15:60416400-60418000	Enhancers	Dnd41	blood
8	chr15:60416600-60417400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr15:60416600-60417400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr15:60416600-60417600	Enhancers	Primary T cells from cord blood	blood
11	chr15:60416600-60419400	Enhancers	GM12878-XiMat	blood
12	chr15:60416800-60417400	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr15:60417200-60419000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr15:60417200-60419200	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr15:60417200-60419400	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr15:60417200-60419400	Weak transcription	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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