Variant report

Variant	rs56249352
Chromosome Location	chr12:64913823-64913824
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10878187	0.80[AMR][1000 genomes]
rs10878189	0.80[AMR][1000 genomes]
rs10878190	0.80[AMR][1000 genomes]
rs11175439	0.80[AMR][1000 genomes]
rs11175445	0.80[AMR][1000 genomes]
rs11175446	0.80[AMR][1000 genomes]
rs12316132	0.80[AMR][1000 genomes]
rs12316944	0.88[AMR][1000 genomes]
rs4964089	0.80[AMR][1000 genomes]
rs4964107	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4964110	0.83[AMR][1000 genomes]
rs4964112	0.83[AMR][1000 genomes]
rs68094298	0.83[AMR][1000 genomes]
rs73122393	0.91[AMR][1000 genomes]
rs7968623	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832443	chr12:64878856-65057265	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64896600-64916000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr12:64905000-64916000	Weak transcription	Fetal Muscle Leg	muscle
3	chr12:64912400-64927600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr12:64912600-64915000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr12:64912600-64915400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr12:64912600-64915600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr12:64912600-64915600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr12:64912600-64915600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr12:64912600-64915800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr12:64912800-64915400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr12:64912800-64915400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr12:64913200-64914000	Enhancers	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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