Variant report

Variant	rs562493566
Chromosome Location	chr22:33459460-33459461
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531568	chr22:33336868-33480272	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv531587	chr22:33346710-33809338	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv948523	chr22:33414164-34098417	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
4	nsv1067068	chr22:33452180-33851033	Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
5	esv2762120	chr22:33458712-33470321	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
6	nsv528534	chr22:33459131-33469031	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33454800-33459800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr22:33454800-33465000	Weak transcription	Fetal Brain Female	brain
3	chr22:33457200-33460000	Enhancers	H9 Cell Line	embryonic stem cell
4	chr22:33457200-33460000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr22:33457200-33460000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr22:33457600-33461000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr22:33457800-33460200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr22:33458000-33459800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr22:33458000-33459800	Enhancers	H1 Cell Line	embryonic stem cell
10	chr22:33458400-33460200	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr22:33459000-33460000	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr22:33459000-33460200	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr22:33459400-33459800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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