Variant report

Variant	rs562495209
Chromosome Location	chr11:83576951-83576952
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898017	chr11:83556067-83583324	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv898018	chr11:83556067-83586526	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv898019	chr11:83556067-83602367	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv898020	chr11:83558738-83602367	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv898021	chr11:83562296-83602367	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv898022	chr11:83562296-83602367	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv898023	chr11:83566115-83602367	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv898024	chr11:83576460-83602367	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83573200-83577400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr11:83574400-83577000	Weak transcription	Brain Anterior Caudate	brain
3	chr11:83574400-83577200	Enhancers	Stomach Smooth Muscle	stomach
4	chr11:83574600-83577600	Enhancers	HMEC	breast
5	chr11:83575200-83577400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:83575600-83577600	Enhancers	NHEK	skin
7	chr11:83576000-83577400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr11:83576000-83577400	Enhancers	NH-A	brain
9	chr11:83576000-83586400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:83576200-83577400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:83576200-83577400	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr11:83576400-83577200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr11:83576600-83577000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:83576600-83577200	Enhancers	Brain Angular Gyrus	brain
15	chr11:83576600-83577400	Enhancers	Brain Cingulate Gyrus	brain
16	chr11:83576600-83578000	Enhancers	Brain Substantia Nigra	brain
17	chr11:83576800-83577200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr11:83576800-83577200	Enhancers	Brain Hippocampus Middle	brain
19	chr11:83576800-83577200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr11:83576800-83577600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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