The 2.0 version of rSNPBase

Variant report

Variant rs562508090
Chromosome Location chr5:43377487-43377488
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:45 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:43367200-43386400 Weak transcription Pancreas Pancrea
2 chr5:43368400-43381600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
3 chr5:43368600-43389800 Weak transcription Stomach Mucosa stomach
4 chr5:43368800-43396400 Weak transcription Primary hematopoietic stem cells short term culture blood
5 chr5:43369000-43387000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
6 chr5:43369200-43386800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
7 chr5:43370000-43396200 Weak transcription Primary B cells from cord blood blood
8 chr5:43371000-43379000 Weak transcription Primary T cells fromperipheralblood blood
9 chr5:43371800-43396800 Weak transcription Small Intestine intestine
10 chr5:43372200-43396800 Weak transcription Gastric stomach
11 chr5:43372800-43382000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
12 chr5:43373200-43396400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
13 chr5:43374400-43381600 Weak transcription Pancreatic Islets Pancreatic Islet
14 chr5:43374600-43396400 Weak transcription Adipose Nuclei Adipose
15 chr5:43375000-43378200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
16 chr5:43375000-43387000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
17 chr5:43375000-43396800 Weak transcription Spleen Spleen
18 chr5:43375200-43379600 Weak transcription Primary T helper naive cells from peripheral blood blood
19 chr5:43375200-43379600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
20 chr5:43375400-43387200 Weak transcription Thymus Thymus
21 chr5:43375800-43377800 Enhancers Fetal Intestine Large intestine
22 chr5:43376200-43378800 Strong transcription Duodenum Mucosa Duodenum
23 chr5:43376200-43378800 Weak transcription Duodenum Smooth Muscle Duodenum
24 chr5:43376200-43382600 Strong transcription Primary T helper cells PMA-I stimulated --
25 chr5:43376200-43389800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
26 chr5:43376400-43377800 Strong transcription Primary T regulatory cells fromperipheralblood blood
27 chr5:43376400-43382200 Strong transcription Sigmoid Colon Sigmoid Colon
28 chr5:43376600-43384800 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
29 chr5:43376600-43384800 Strong transcription Rectal Mucosa Donor 31 rectum
30 chr5:43376800-43381000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
31 chr5:43376800-43386800 Weak transcription HMEC breast
32 chr5:43377000-43377600 Strong transcription Primary T killer naive cells fromperipheralblood blood
33 chr5:43377000-43381800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
34 chr5:43377000-43387000 Weak transcription Lung lung
35 chr5:43377200-43377600 Enhancers Fetal Intestine Small intestine
36 chr5:43377200-43379600 Weak transcription Breast Myoepithelial Primary Cells Breast
37 chr5:43377200-43379600 Weak transcription Primary B cells from peripheral blood blood
38 chr5:43377200-43379600 Weak transcription Primary T helper naive cells fromperipheralblood blood
39 chr5:43377200-43381200 Weak transcription Primary hematopoietic stem cells blood
40 chr5:43377200-43381800 Strong transcription Primary mononuclear cells fromperipheralblood Blood
41 chr5:43377200-43396800 Weak transcription Colonic Mucosa Colon
42 chr5:43377400-43378400 Weak transcription Rectal Mucosa Donor 29 rectum
43 chr5:43377400-43379400 Weak transcription Primary T helper cells fromperipheralblood blood
44 chr5:43377400-43379600 Weak transcription Primary T cells from cord blood blood
45 chr5:43377400-43379600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015