Variant report

Variant	rs562511992
Chromosome Location	chr10:27011216-27011217
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:26995580..26998397-chr10:27011031..27013187,2	K562	blood:
2	chr10:27009604..27012083-chr10:27443909..27445866,2	K562	blood:

Variant related genes	Relation type
ENSG00000136758	Chromatin interaction
ENSG00000120539	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv550233	chr10:26968171-27011323	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv1818223	chr10:26999121-27022126	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv933544	chr10:27005220-27111998	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	esv2761585	chr10:27010701-27026012	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26987600-27024400	Weak transcription	Fetal Kidney	kidney
2	chr10:26987800-27020400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr10:26987800-27031200	Weak transcription	NHDF-Ad	bronchial
4	chr10:26988000-27069600	Weak transcription	Colon Smooth Muscle	Colon
5	chr10:26989400-27031000	Weak transcription	Small Intestine	intestine
6	chr10:26994400-27040800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr10:26995400-27023000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr10:26995800-27026600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr10:26996000-27026600	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr10:26996200-27026200	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr10:26996200-27028000	Weak transcription	Psoas Muscle	Psoas
12	chr10:26996600-27012000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr10:26996600-27022400	Weak transcription	Brain Angular Gyrus	brain
14	chr10:26996600-27023600	Weak transcription	Fetal Heart	heart
15	chr10:26997200-27012200	Weak transcription	HSMM	muscle
16	chr10:26997200-27022800	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr10:26997200-27024400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr10:26997400-27022400	Weak transcription	Brain Substantia Nigra	brain
19	chr10:26997600-27012800	Weak transcription	Brain Hippocampus Middle	brain
20	chr10:26997600-27054400	Weak transcription	Fetal Brain Male	brain
21	chr10:26998000-27011800	Weak transcription	Rectal Smooth Muscle	rectum
22	chr10:26998000-27022400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr10:26998200-27015000	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr10:26998200-27015400	Weak transcription	Brain Anterior Caudate	brain
25	chr10:26998200-27022400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr10:26998600-27012200	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr10:26999800-27022600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
28	chr10:26999800-27037400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr10:27001000-27031800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr10:27001200-27041200	Strong transcription	Fetal Thymus	thymus
31	chr10:27001800-27041200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr10:27002200-27015200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
33	chr10:27002200-27017000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr10:27002200-27021600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr10:27002200-27023400	Strong transcription	HUES64 Cell Line	embryonic stem cell
36	chr10:27002400-27017200	Strong transcription	HUES48 Cell Line	embryonic stem cell
37	chr10:27003600-27014600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr10:27004200-27011800	Weak transcription	Osteobl	bone
39	chr10:27004200-27012400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr10:27004200-27031200	Weak transcription	Hela-S3	cervix
41	chr10:27004400-27016200	Weak transcription	Fetal Lung	lung
42	chr10:27004400-27022800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr10:27004600-27014600	Weak transcription	Colonic Mucosa	Colon
44	chr10:27005200-27012800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr10:27005200-27013600	Weak transcription	Placenta	Placenta
46	chr10:27005400-27012800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr10:27005400-27013600	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr10:27006000-27012200	Weak transcription	NH-A	brain
49	chr10:27006000-27016000	Weak transcription	HUVEC	blood vessel
50	chr10:27006000-27022200	Strong transcription	Fetal Intestine Small	intestine

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