The 2.0 version of rSNPBase

Variant report

Variant rs562513590
Chromosome Location chr18:43761182-43761183
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:81 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr18:43755000-43761600 Weak transcription Pancreas Pancrea
2 chr18:43755000-43766800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
3 chr18:43755000-43769600 Weak transcription Gastric stomach
4 chr18:43755200-43780400 Weak transcription Aorta Aorta
5 chr18:43755600-43761600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
6 chr18:43755600-43761600 Weak transcription Ovary ovary
7 chr18:43755600-43762000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
8 chr18:43755600-43762600 Enhancers Primary T cells fromperipheralblood blood
9 chr18:43755600-43762600 Weak transcription Stomach Smooth Muscle stomach
10 chr18:43755600-43763000 Weak transcription Cortex derived primary cultured neurospheres brain
11 chr18:43755600-43764600 Weak transcription iPS-20b Cell Line embryonic stem cell
12 chr18:43755600-43766800 Weak transcription Fetal Intestine Small intestine
13 chr18:43755600-43768000 Weak transcription Fetal Intestine Large intestine
14 chr18:43755600-43776200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
15 chr18:43755600-43795600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
16 chr18:43755800-43761800 Weak transcription Rectal Smooth Muscle rectum
17 chr18:43755800-43762400 Weak transcription Fetal Adrenal Gland Adrenal Gland
18 chr18:43755800-43762600 Weak transcription Sigmoid Colon Sigmoid Colon
19 chr18:43755800-43765800 Enhancers Primary T helper 17 cells PMA-I stimulated --
20 chr18:43755800-43766000 Enhancers Primary T helper cells fromperipheralblood blood
21 chr18:43755800-43776800 Weak transcription Fetal Muscle Leg muscle
22 chr18:43755800-43779600 Weak transcription Thymus Thymus
23 chr18:43756000-43763000 Weak transcription HUES6 Cell Line embryonic stem cell
24 chr18:43756000-43771000 Weak transcription NHDF-Ad bronchial
25 chr18:43756200-43761800 Weak transcription Rectal Mucosa Donor 29 rectum
26 chr18:43756200-43762200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
27 chr18:43756200-43762200 Weak transcription Right Atrium heart
28 chr18:43756200-43762400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
29 chr18:43756200-43762800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
30 chr18:43756200-43763800 Enhancers Primary T helper memory cells from peripheral blood 1 blood
31 chr18:43756200-43765800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
32 chr18:43756400-43761200 Weak transcription Hela-S3 cervix
33 chr18:43756400-43761400 Weak transcription Fetal Heart heart
34 chr18:43756400-43761800 Weak transcription Colon Smooth Muscle Colon
35 chr18:43756400-43762000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
36 chr18:43756400-43762000 Weak transcription A549 lung
37 chr18:43756400-43762400 Weak transcription Adipose Nuclei Adipose
38 chr18:43756400-43764400 Weak transcription Monocytes-CD14+_RO01746 blood
39 chr18:43756400-43765600 Enhancers Primary T helper naive cells fromperipheralblood blood
40 chr18:43756400-43766600 Enhancers Primary T helper cells PMA-I stimulated --
41 chr18:43756600-43761800 Weak transcription Duodenum Mucosa Duodenum
42 chr18:43756600-43762600 Weak transcription Primary B cells from cord blood blood
43 chr18:43756600-43764400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
44 chr18:43756600-43765600 Weak transcription HepG2 liver
45 chr18:43756600-43771600 Weak transcription Brain Inferior Temporal Lobe brain
46 chr18:43756800-43761800 Weak transcription Skeletal Muscle Male skeletal muscle
47 chr18:43756800-43796000 Weak transcription Esophagus oesophagus
48 chr18:43757000-43761600 Weak transcription Breast Myoepithelial Primary Cells Breast
49 chr18:43757000-43762400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
50 chr18:43757200-43761800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood

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Last update: Aug 31, 2015