Variant report

Variant	rs562545720
Chromosome Location	chr15:58356800-58356801
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:15)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:15 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CUX1	chr15:58356567-58357186	K562	blood:	n/a	chr15:58356919-58356928
2	UBTF	chr15:58356671-58358871	K562	blood:	n/a	n/a
3	MXI1	chr15:58356595-58357106	K562	blood:	n/a	n/a
4	POLR2A	chr15:58356659-58357394	K562	blood:	n/a	n/a
5	EP300	chr15:58356540-58357388	K562	blood:	n/a	n/a
6	TEAD4	chr15:58356572-58357390	K562	blood:	n/a	n/a
7	MYC	chr15:58356499-58358940	K562	blood:	n/a	n/a
8	MAX	chr15:58356682-58356940	K562	blood:	n/a	n/a
9	POLR2A	chr15:58356741-58359187	K562	blood:	n/a	n/a
10	SIN3AK20	chr15:58356596-58356949	K562	blood:	n/a	n/a
11	SUZ12	chr15:58356332-58358890	NT2-D1	testis:	n/a	n/a
12	MYC	chr15:58356500-58359059	K562	blood:	n/a	n/a
13	TBL1XR1	chr15:58356627-58357219	K562	blood:	n/a	n/a
14	UBTF	chr15:58356794-58359117	K562	blood:	n/a	n/a
15	POLR2A	chr15:58356666-58359335	K562	blood:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:58306217..58308259-chr15:58356597..58358737,2	K562	blood:
2	chr15:58299490..58302063-chr15:58354314..58356908,2	K562	blood:
3	chr15:58328560..58331091-chr15:58356467..58358929,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000259285	TF binding region
ENSG00000128918	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv904263	chr15:58340072-58437346	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv569596	chr15:58355798-58408763	Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv3427988	chr15:58356685-58359533	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58353400-58358800	Active TSS	K562	blood
2	chr15:58353600-58359000	Active TSS	Fetal Kidney	kidney
3	chr15:58354000-58356800	Flanking Active TSS	HUVEC	blood vessel
4	chr15:58354200-58358800	Active TSS	Ovary	ovary
5	chr15:58354400-58358800	Active TSS	Right Atrium	heart
6	chr15:58355800-58357200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
7	chr15:58355800-58357200	Active TSS	Fetal Adrenal Gland	Adrenal Gland
8	chr15:58356000-58357400	Bivalent/Poised TSS	Fetal Muscle Leg	muscle
9	chr15:58356400-58356800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
10	chr15:58356400-58357000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
11	chr15:58356600-58356800	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
12	chr15:58356600-58356800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
13	chr15:58356600-58357000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
14	chr15:58356600-58357000	Active TSS	Fetal Stomach	stomach
15	chr15:58356800-58357000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
16	chr15:58356800-58357000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
17	chr15:58356800-58357000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
18	chr15:58356800-58357000	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
19	chr15:58356800-58357200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
20	chr15:58356800-58357200	Active TSS	HUVEC	blood vessel

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