Variant report

Variant	rs56256128
Chromosome Location	chr16:81327168-81327169
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:81307769..81309694-chr16:81327148..81329061,2	MCF-7	breast:
2	chr16:81297782..81301485-chr16:81326515..81330018,4	MCF-7	breast:
3	chr16:81322615..81326128-chr16:81326201..81331099,5	MCF-7	breast:
4	chr16:81319212..81323207-chr16:81324866..81327947,3	MCF-7	breast:
5	chr16:81208882..81211862-chr16:81326884..81329141,2	K562	blood:
6	chr16:81310484..81313068-chr16:81326706..81330411,4	MCF-7	breast:
7	chr16:81323577..81326215-chr16:81326457..81329362,4	MCF-7	breast:
8	chr16:81323374..81325660-chr16:81326065..81328689,2	K562	blood:
9	chr16:81326996..81329289-chr16:81330307..81331868,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11859133	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12448327	0.95[ASN][1000 genomes]
rs12929595	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12929776	0.89[EUR][1000 genomes]
rs2059280	0.92[EUR][1000 genomes]
rs2081264	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4625712	0.90[EUR][1000 genomes]
rs4889299	0.88[EUR][1000 genomes]
rs4889300	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4889302	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6564871	0.81[EUR][1000 genomes]
rs7202902	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8053351	0.81[EUR][1000 genomes]
rs889747	0.92[EUR][1000 genomes]
rs918773	0.92[EUR][1000 genomes]
rs918775	0.92[EUR][1000 genomes]
rs9673795	0.81[EUR][1000 genomes]
rs9889027	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv532597	chr16:81009718-81388348	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
4	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
5	esv2755860	chr16:81262516-81333568	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81309200-81345200	Weak transcription	Brain Hippocampus Middle	brain
2	chr16:81323400-81327800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr16:81325200-81327400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr16:81326600-81328600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr16:81326600-81329600	Enhancers	Stomach Mucosa	stomach
6	chr16:81326800-81327200	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr16:81326800-81327800	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr16:81326800-81328600	Enhancers	HMEC	breast
9	chr16:81326800-81328600	Enhancers	Osteobl	bone
10	chr16:81327000-81327200	Enhancers	Placenta Amnion	Placenta Amnion

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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