Variant report

Variant	rs562561539
Chromosome Location	chr7:137872147-137872148
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	esv3477523	chr7:137871944-137873581	Enhancers ZNF genes & repeats Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
3	esv3477524	chr7:137871944-137873581	Enhancers ZNF genes & repeats Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137869800-137873000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr7:137870000-137872400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:137870200-137872400	Enhancers	NH-A	brain
4	chr7:137870400-137872800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:137871000-137872200	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr7:137871200-137872200	Enhancers	Osteobl	bone
7	chr7:137871200-137872800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr7:137871200-137874000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
9	chr7:137871200-137874400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
10	chr7:137871400-137872200	Enhancers	Brain Cingulate Gyrus	brain
11	chr7:137871400-137872200	Enhancers	Brain Germinal Matrix	brain
12	chr7:137871400-137873400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
13	chr7:137871600-137872200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr7:137871600-137873600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
15	chr7:137871600-137874400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
16	chr7:137871800-137872800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr7:137871800-137873600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
18	chr7:137871800-137874200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr7:137872000-137873200	Weak transcription	Brain Angular Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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