Variant report

Variant	rs562572482
Chromosome Location	chr4:107053164-107053165
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799793	chr4:107000462-107062671	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1801716	chr4:107000462-107062671	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv1849248	chr4:107000462-107062671	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv1850577	chr4:107000462-107062671	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv511247	chr4:107022702-107065220	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv879701	chr4:107024776-107163128	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv4450	chr4:107037823-107082669	Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv508301	chr4:107049086-107092730	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	esv1851766	chr4:107052107-107062671	ZNF genes & repeats Strong transcription Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv437409	chr4:107052107-107064347	Weak transcription ZNF genes & repeats Enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv437410	chr4:107052107-107064347	Weak transcription Strong transcription ZNF genes & repeats Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	nsv437411	chr4:107052107-107074097	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107031800-107053400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr4:107032000-107058200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr4:107033600-107053400	Weak transcription	Osteobl	bone
4	chr4:107033800-107053400	Weak transcription	HSMM	muscle
5	chr4:107034200-107053400	Weak transcription	Right Ventricle	heart
6	chr4:107035200-107057200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr4:107035600-107083200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr4:107035800-107053200	Weak transcription	Fetal Stomach	stomach
9	chr4:107035800-107053200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr4:107035800-107053400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr4:107035800-107053400	Weak transcription	Lung	lung
12	chr4:107035800-107053400	Weak transcription	Pancreas	Pancrea
13	chr4:107035800-107053600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr4:107035800-107053600	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr4:107036000-107053200	Weak transcription	Brain Anterior Caudate	brain
16	chr4:107037400-107053400	Weak transcription	Brain Cingulate Gyrus	brain
17	chr4:107037400-107053400	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr4:107037600-107053400	Weak transcription	Brain Hippocampus Middle	brain
19	chr4:107037600-107056200	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr4:107037600-107060600	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr4:107037600-107061600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr4:107037600-107066400	Weak transcription	Fetal Kidney	kidney
23	chr4:107037800-107053400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr4:107037800-107053400	Weak transcription	Adipose Nuclei	Adipose
25	chr4:107037800-107053400	Weak transcription	HepG2	liver
26	chr4:107037800-107077400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr4:107038000-107053200	Weak transcription	Primary B cells from cord blood	blood
28	chr4:107038000-107053400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr4:107038000-107053400	Weak transcription	Aorta	Aorta
30	chr4:107038000-107053400	Weak transcription	Left Ventricle	heart
31	chr4:107038000-107053400	Weak transcription	Stomach Smooth Muscle	stomach
32	chr4:107038000-107055400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr4:107038000-107056800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr4:107038000-107112000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr4:107038200-107053400	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr4:107038400-107053400	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr4:107038400-107053400	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr4:107038400-107053400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr4:107038400-107053400	Weak transcription	Ovary	ovary
40	chr4:107047000-107053200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr4:107050800-107053600	Weak transcription	Thymus	Thymus
42	chr4:107051800-107054800	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr4:107052000-107053400	Weak transcription	Colonic Mucosa	Colon
44	chr4:107052200-107053800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr4:107052600-107054000	ZNF genes & repeats	Fetal Intestine Large	intestine
46	chr4:107052600-107054000	ZNF genes & repeats	Fetal Thymus	thymus
47	chr4:107052800-107053200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr4:107052800-107053400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
49	chr4:107052800-107053400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr4:107052800-107053400	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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