Variant report

Variant	rs562580823
Chromosome Location	chr4:121842655-121842656
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:121836736..121838271-chr4:121841875..121843483,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1009395	chr4:121841442-122557363	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv537235	chr4:121841442-122557363	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv3405799	chr4:121842552-121845050	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121837000-121842800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:121840200-121842800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:121840400-121842800	Weak transcription	Aorta	Aorta
4	chr4:121841800-121842800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr4:121841800-121843000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:121841800-121843000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr4:121841800-121844600	Active TSS	iPS-20b Cell Line	embryonic stem cell
8	chr4:121842200-121842800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr4:121842200-121842800	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr4:121842200-121843000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr4:121842200-121843000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr4:121842400-121842800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr4:121842400-121842800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
14	chr4:121842400-121842800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr4:121842400-121842800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr4:121842400-121842800	Flanking Active TSS	Fetal Intestine Large	intestine
17	chr4:121842400-121842800	Enhancers	Placenta Amnion	Placenta Amnion
18	chr4:121842400-121842800	Flanking Active TSS	NHEK	skin
19	chr4:121842400-121842800	Flanking Active TSS	NHLF	lung
20	chr4:121842400-121843000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
21	chr4:121842400-121843000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr4:121842400-121843000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
23	chr4:121842400-121843000	Flanking Active TSS	HMEC	breast
24	chr4:121842400-121843000	Flanking Active TSS	NH-A	brain
25	chr4:121842400-121843200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr4:121842400-121843200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr4:121842400-121844400	Active TSS	ES-I3 Cell Line	embryonic stem cell
28	chr4:121842400-121844400	Active TSS	A549	lung
29	chr4:121842400-121844600	Active TSS	iPS-15b Cell Line	embryonic stem cell
30	chr4:121842400-121844600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr4:121842400-121844800	Active TSS	Pancreatic Islets	Pancreatic Islet
32	chr4:121842600-121842800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr4:121842600-121842800	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr4:121842600-121842800	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
35	chr4:121842600-121842800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
36	chr4:121842600-121842800	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
37	chr4:121842600-121842800	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr4:121842600-121842800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
39	chr4:121842600-121842800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr4:121842600-121842800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr4:121842600-121842800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr4:121842600-121842800	Bivalent Enhancer	Liver	Liver
43	chr4:121842600-121842800	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
44	chr4:121842600-121842800	Flanking Active TSS	Colonic Mucosa	Colon
45	chr4:121842600-121842800	Flanking Active TSS	Colon Smooth Muscle	Colon
46	chr4:121842600-121842800	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
47	chr4:121842600-121842800	Enhancers	Esophagus	oesophagus
48	chr4:121842600-121842800	Flanking Active TSS	Fetal Heart	heart
49	chr4:121842600-121842800	Flanking Active TSS	Fetal Intestine Small	intestine
50	chr4:121842600-121842800	Flanking Active TSS	Fetal Kidney	kidney

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