Variant report

Variant	rs56258703
Chromosome Location	chr13:110923807-110923808
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12430390	0.92[EUR][1000 genomes]
rs552125	1.00[ASN][1000 genomes]
rs58455864	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs595325	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61963337	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61963356	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61963357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61963358	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61964261	1.00[ASN][1000 genomes]
rs622253	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs623157	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs668149	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73617438	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038914	chr13:110860219-111190104	Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110911200-110924000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr13:110912200-110924000	Enhancers	Left Ventricle	heart
3	chr13:110915200-110936200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr13:110915600-110935800	Weak transcription	Gastric	stomach
5	chr13:110916600-110935800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr13:110916800-110924800	Weak transcription	HSMMtube	muscle
7	chr13:110916800-110927800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr13:110917200-110924000	Genic enhancers	Fetal Muscle Leg	muscle
9	chr13:110917400-110939000	Weak transcription	Fetal Intestine Large	intestine
10	chr13:110918000-110924600	Weak transcription	Fetal Kidney	kidney
11	chr13:110918200-110935800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr13:110918600-110924000	Enhancers	Rectal Smooth Muscle	rectum
13	chr13:110918600-110924200	Enhancers	Right Ventricle	heart
14	chr13:110918800-110930000	Weak transcription	Fetal Intestine Small	intestine
15	chr13:110919200-110928400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr13:110919600-110927200	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr13:110919600-110928600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr13:110919600-110938600	Weak transcription	HMEC	breast
19	chr13:110919800-110929800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr13:110919800-110937600	Weak transcription	NHEK	skin
21	chr13:110920000-110924600	Weak transcription	HUVEC	blood vessel
22	chr13:110920000-110929400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr13:110920200-110951200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr13:110920600-110934200	Weak transcription	Pancreas	Pancrea
25	chr13:110921000-110926000	Strong transcription	NH-A	brain
26	chr13:110921000-110929000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr13:110921200-110927000	Weak transcription	NHDF-Ad	bronchial
28	chr13:110921200-110927200	Strong transcription	Osteobl	bone
29	chr13:110921200-110929800	Weak transcription	Fetal Lung	lung
30	chr13:110921400-110924800	Weak transcription	Fetal Stomach	stomach
31	chr13:110921400-110925000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr13:110921400-110926600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr13:110921400-110926600	Weak transcription	Spleen	Spleen
34	chr13:110921400-110935800	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr13:110921400-110935800	Weak transcription	Esophagus	oesophagus
36	chr13:110922000-110924200	Enhancers	Stomach Smooth Muscle	stomach
37	chr13:110922200-110935800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr13:110922400-110924000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr13:110922400-110926800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr13:110922600-110924200	Enhancers	Adipose Nuclei	Adipose
41	chr13:110922600-110924400	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr13:110922600-110926600	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr13:110922600-110934000	Weak transcription	HSMM	muscle
44	chr13:110922600-110934200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr13:110923000-110925200	Enhancers	Aorta	Aorta
46	chr13:110923200-110924000	Enhancers	Placenta	Placenta
47	chr13:110923200-110924400	Weak transcription	Fetal Muscle Trunk	muscle
48	chr13:110923200-110924800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr13:110923200-110925800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr13:110923400-110924600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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