Variant report

Variant	rs56259196
Chromosome Location	chr15:49449892-49449893
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:49443824..49452367-chr15:49460648..49465189,20	K562	blood:
2	chr15:49446083..49452367-chr15:49460693..49464702,19	K562	blood:
3	chr15:49424882..49426670-chr15:49449093..49451869,2	MCF-7	breast:
4	chr15:49446244..49450190-chr15:50645448..50647621,4	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FGF7-3	chr15:49448495-49450822	NR_036507

Variant related genes	Relation type
ENSG00000264210	Chromatin interaction
ENSG00000104064	Chromatin interaction
ENSG00000244879	Chromatin interaction
ENSG00000156958	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv974572	chr15:49448277-49450621	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49445800-49450400	Active TSS	NHLF	lung
2	chr15:49446000-49450000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:49446400-49450400	Active TSS	GM12878-XiMat	blood
4	chr15:49446600-49450000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr15:49448400-49450000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr15:49448800-49450000	Flanking Active TSS	Dnd41	blood
7	chr15:49448800-49450200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr15:49448800-49450200	Enhancers	Colon Smooth Muscle	Colon
9	chr15:49448800-49450400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr15:49448800-49450400	Active TSS	Duodenum Mucosa	Duodenum
11	chr15:49448800-49456200	Weak transcription	Gastric	stomach
12	chr15:49448800-49461400	Weak transcription	Small Intestine	intestine
13	chr15:49448800-49461800	Weak transcription	Colonic Mucosa	Colon
14	chr15:49448800-49461800	Weak transcription	Stomach Mucosa	stomach
15	chr15:49448800-49462000	Weak transcription	Placenta	Placenta
16	chr15:49448800-49462000	Weak transcription	Left Ventricle	heart
17	chr15:49448800-49462000	Weak transcription	Lung	lung
18	chr15:49448800-49462200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr15:49448800-49462200	Weak transcription	Ovary	ovary
20	chr15:49448800-49462200	Weak transcription	Pancreas	Pancrea
21	chr15:49448800-49462200	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr15:49448800-49462400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr15:49448800-49462400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr15:49448800-49462400	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr15:49448800-49462400	Weak transcription	Spleen	Spleen
26	chr15:49449000-49450000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr15:49449000-49450000	Enhancers	Primary T cells from cord blood	blood
28	chr15:49449000-49450000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr15:49449000-49450200	Enhancers	Primary T helper cells PMA-I stimulated	--
30	chr15:49449000-49450400	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr15:49449000-49450600	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr15:49449000-49453200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr15:49449000-49454200	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr15:49449000-49454400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr15:49449000-49454800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr15:49449000-49461600	Weak transcription	Fetal Intestine Small	intestine
37	chr15:49449000-49461800	Weak transcription	Brain Germinal Matrix	brain
38	chr15:49449000-49462000	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr15:49449000-49462000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr15:49449000-49462000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr15:49449000-49462000	Weak transcription	Fetal Muscle Trunk	muscle
42	chr15:49449000-49462000	Weak transcription	Fetal Muscle Leg	muscle
43	chr15:49449000-49462000	Weak transcription	Stomach Smooth Muscle	stomach
44	chr15:49449000-49462200	Weak transcription	Thymus	Thymus
45	chr15:49449200-49450000	Enhancers	Cortex derived primary cultured neurospheres	brain
46	chr15:49449200-49450400	Enhancers	Hela-S3	cervix
47	chr15:49449200-49454200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr15:49449200-49461600	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr15:49449200-49461800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr15:49449200-49462000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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