Variant report

Variant	rs56260074
Chromosome Location	chr5:146960581-146960582
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs55699514	1.00[AFR][1000 genomes]
rs55975714	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56664231	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58112335	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58587592	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58648568	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59864666	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61397161	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72833378	1.00[AMR][1000 genomes]
rs73266263	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73266265	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73266266	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73266279	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73266283	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73266284	1.00[AMR][1000 genomes]
rs73266291	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73266301	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73266302	1.00[AMR][1000 genomes]
rs73268115	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268125	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268143	1.00[AMR][1000 genomes]
rs73268166	1.00[AMR][1000 genomes]
rs73268177	1.00[AMR][1000 genomes]
rs73797116	1.00[AMR][1000 genomes]
rs73797123	1.00[AMR][1000 genomes]
rs73797130	1.00[AMR][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146954600-146974000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:146954800-146973800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:146957000-146996200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr5:146957600-146963400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:146957800-147038000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr5:146958000-146962200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr5:146958000-146973600	Weak transcription	Brain Substantia Nigra	brain
8	chr5:146958200-146960600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr5:146958200-146972200	Weak transcription	Brain Hippocampus Middle	brain
10	chr5:146958200-146972400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr5:146958600-146969000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr5:146959000-146961000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
13	chr5:146959400-146960600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
14	chr5:146959400-146961200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
15	chr5:146959400-146961200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
16	chr5:146960200-146960800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr5:146960400-146960800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr5:146960400-146961200	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr5:146960400-146970400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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