Variant report

Variant	rs562603316
Chromosome Location	chr13:98103789-98103790
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:98101345..98104085-chr13:98121478..98123509,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv1794802	chr13:98076911-98106042	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv1797132	chr13:98076911-98106042	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv562802	chr13:98098524-98107983	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv562803	chr13:98098982-98108199	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv562804	chr13:98098982-98108203	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	nsv562805	chr13:98098982-98108361	Weak transcription Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	esv3515307	chr13:98103758-98108517	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98087400-98122200	Weak transcription	Gastric	stomach
2	chr13:98087600-98104600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr13:98087600-98116400	Weak transcription	Esophagus	oesophagus
4	chr13:98087600-98124400	Weak transcription	Pancreas	Pancrea
5	chr13:98088400-98108000	Weak transcription	Fetal Thymus	thymus
6	chr13:98088400-98111600	Weak transcription	Psoas Muscle	Psoas
7	chr13:98088400-98116400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr13:98088600-98112800	Weak transcription	Thymus	Thymus
9	chr13:98088600-98119600	Weak transcription	NH-A	brain
10	chr13:98088800-98105600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr13:98088800-98105600	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr13:98088800-98111800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr13:98088800-98116400	Weak transcription	Fetal Intestine Small	intestine
14	chr13:98088800-98118000	Weak transcription	HMEC	breast
15	chr13:98088800-98118400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr13:98088800-98119000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr13:98089000-98116400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr13:98089200-98105200	Weak transcription	Fetal Intestine Large	intestine
19	chr13:98089200-98111800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr13:98089200-98111800	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr13:98089200-98116400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr13:98089200-98116400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr13:98089200-98116400	Weak transcription	NHEK	skin
24	chr13:98089200-98126600	Weak transcription	Stomach Smooth Muscle	stomach
25	chr13:98089800-98106200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr13:98089800-98107000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr13:98089800-98107600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr13:98089800-98122800	Weak transcription	Small Intestine	intestine
29	chr13:98090000-98105600	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr13:98090800-98116400	Weak transcription	Aorta	Aorta
31	chr13:98091000-98111400	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr13:98091200-98106000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr13:98091200-98112800	Weak transcription	Right Ventricle	heart
34	chr13:98091400-98105200	Weak transcription	Adipose Nuclei	Adipose
35	chr13:98091400-98108000	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr13:98091800-98111600	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr13:98091800-98116200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr13:98091800-98116400	Weak transcription	HUVEC	blood vessel
39	chr13:98091800-98123000	Weak transcription	HSMM	muscle
40	chr13:98092000-98107200	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr13:98092000-98110600	Weak transcription	Fetal Heart	heart
42	chr13:98092000-98111800	Weak transcription	Fetal Brain Male	brain
43	chr13:98092000-98115200	Weak transcription	HepG2	liver
44	chr13:98092000-98116400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr13:98092400-98108000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr13:98092800-98111600	Weak transcription	Placenta	Placenta
47	chr13:98093400-98106000	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr13:98093600-98111400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr13:98093800-98105400	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr13:98093800-98105400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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