Variant report

Variant	rs56260584
Chromosome Location	chr3:47484255-47484256
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12490467	0.80[EUR][1000 genomes]
rs12636235	0.93[EUR][1000 genomes]
rs17079580	0.80[EUR][1000 genomes]
rs4683328	0.80[EUR][1000 genomes]
rs4858889	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876756	chr3:47002931-47586514	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:47450400-47484800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:47463000-47485200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:47463400-47484600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
4	chr3:47463600-47484800	Strong transcription	Primary T cells from cord blood	blood
5	chr3:47465400-47484600	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr3:47469200-47484400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr3:47471800-47485000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr3:47472000-47484600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr3:47472400-47484600	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr3:47472400-47485200	Weak transcription	Fetal Brain Male	brain
11	chr3:47472800-47484400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr3:47473200-47487200	Weak transcription	HUVEC	blood vessel
13	chr3:47474600-47489600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr3:47475000-47484600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr3:47476000-47485800	Weak transcription	Fetal Kidney	kidney
16	chr3:47476600-47484400	Weak transcription	Aorta	Aorta
17	chr3:47476600-47485400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr3:47476600-47514200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr3:47476800-47484800	Weak transcription	NH-A	brain
20	chr3:47478200-47484600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr3:47478200-47485000	Strong transcription	Dnd41	blood
22	chr3:47478400-47484800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr3:47479000-47484600	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr3:47479200-47484600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr3:47479400-47484600	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr3:47479400-47484600	Strong transcription	Primary T helper cells PMA-I stimulated	--
27	chr3:47479400-47484600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr3:47479400-47484600	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr3:47479400-47484800	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr3:47479600-47485800	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr3:47479800-47484600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr3:47480000-47484400	Strong transcription	Fetal Stomach	stomach
33	chr3:47480200-47484600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr3:47480200-47484600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr3:47480400-47485200	Strong transcription	K562	blood
36	chr3:47480800-47484400	Strong transcription	Brain Germinal Matrix	brain
37	chr3:47480800-47484800	Strong transcription	Thymus	Thymus
38	chr3:47481000-47485000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr3:47481200-47484400	Strong transcription	H1 Cell Line	embryonic stem cell
40	chr3:47481400-47496000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr3:47481400-47500600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr3:47481600-47484400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr3:47481600-47484400	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr3:47481600-47484400	Weak transcription	Rectal Smooth Muscle	rectum
45	chr3:47481600-47486000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr3:47481800-47484400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr3:47481800-47485000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr3:47481800-47492600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr3:47482000-47484400	Weak transcription	Hela-S3	cervix
50	chr3:47482200-47488800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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