Variant report

Variant	rs56261161
Chromosome Location	chr4:127732669-127732670
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:127731507..127733827-chr4:127738562..127741245,2	K562	blood:
2	chr4:127731463..127733823-chr4:127736034..127738057,2	K562	blood:

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs1032819	0.85[ASN][1000 genomes]
rs1032820	0.85[ASN][1000 genomes]
rs10857118	0.85[ASN][1000 genomes]
rs11098890	0.85[ASN][1000 genomes]
rs11098895	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1167189	0.81[ASN][1000 genomes]
rs11724202	0.85[ASN][1000 genomes]
rs11734063	0.85[ASN][1000 genomes]
rs12499781	0.85[ASN][1000 genomes]
rs12500556	0.85[ASN][1000 genomes]
rs12502973	0.81[EUR][1000 genomes]
rs12506431	0.85[ASN][1000 genomes]
rs12507245	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12507438	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12510029	0.85[ASN][1000 genomes]
rs12512290	0.85[ASN][1000 genomes]
rs12642024	0.87[ASN][1000 genomes]
rs12642632	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12646727	0.86[ASN][1000 genomes]
rs12649784	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13104073	0.82[ASN][1000 genomes]
rs13105260	0.86[ASN][1000 genomes]
rs13117741	0.88[ASN][1000 genomes]
rs13134285	0.82[ASN][1000 genomes]
rs13145472	0.89[ASN][1000 genomes]
rs13147729	0.91[ASN][1000 genomes]
rs1503603	0.82[EUR][1000 genomes]
rs1503616	0.85[ASN][1000 genomes]
rs1503618	0.87[ASN][1000 genomes]
rs1503619	0.87[ASN][1000 genomes]
rs1503622	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16997928	0.85[ASN][1000 genomes]
rs17011502	0.85[ASN][1000 genomes]
rs17011593	0.85[ASN][1000 genomes]
rs17011614	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1847345	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1995473	0.85[ASN][1000 genomes]
rs2134642	0.83[AMR][1000 genomes]
rs2202279	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2391100	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34078351	0.80[ASN][1000 genomes]
rs35119048	0.87[ASN][1000 genomes]
rs35815056	0.85[ASN][1000 genomes]
rs4373174	0.85[ASN][1000 genomes]
rs55832124	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56807249	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57297582	0.81[EUR][1000 genomes]
rs57858535	0.86[ASN][1000 genomes]
rs57921410	0.87[ASN][1000 genomes]
rs57945585	0.87[ASN][1000 genomes]
rs59049129	0.87[ASN][1000 genomes]
rs60076307	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60726529	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60860289	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62322170	0.87[ASN][1000 genomes]
rs62322171	0.87[ASN][1000 genomes]
rs62322173	0.87[ASN][1000 genomes]
rs62322183	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62322186	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62322187	0.81[EUR][1000 genomes]
rs62322188	0.81[EUR][1000 genomes]
rs62322221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62322226	0.81[EUR][1000 genomes]
rs62324214	0.85[ASN][1000 genomes]
rs62324216	0.83[ASN][1000 genomes]
rs62324219	0.83[ASN][1000 genomes]
rs62324227	0.85[ASN][1000 genomes]
rs62324228	0.85[ASN][1000 genomes]
rs62324229	0.85[ASN][1000 genomes]
rs62324230	0.85[ASN][1000 genomes]
rs6534582	0.89[ASN][1000 genomes]
rs6857787	0.89[ASN][1000 genomes]
rs72674477	0.83[ASN][1000 genomes]
rs72674480	0.85[ASN][1000 genomes]
rs72675928	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7660971	0.85[ASN][1000 genomes]
rs7661738	0.87[ASN][1000 genomes]
rs7664355	0.83[ASN][1000 genomes]
rs7665607	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7688921	0.82[ASN][1000 genomes]
rs7695444	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7696279	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012833	chr4:127468474-127760933	Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv537242	chr4:127468474-127760933	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv524850	chr4:127470903-127768849	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv879908	chr4:127646765-127749390	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv879909	chr4:127646765-127792639	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv879910	chr4:127646765-127805466	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv879911	chr4:127646765-127835677	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv879912	chr4:127706053-127775563	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127716000-127756000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:127722200-127737800	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links