Variant report

Variant	rs56262947
Chromosome Location	chr17:33825063-33825064
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ELF1	chr17:33824872-33825410	GM12878	blood:	n/a	chr17:33825193-33825202 chr17:33825126-33825138

Variant related genes	Relation type
ENSG00000267369	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs55810669	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055936	chr17:33327166-33884184	Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
2	nsv543317	chr17:33327166-33884184	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
3	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
4	nsv574741	chr17:33552275-33827134	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:33815800-33826000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr17:33816000-33826400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr17:33822200-33826600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr17:33823000-33826200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr17:33823000-33830400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr17:33823400-33825600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr17:33823400-33828200	Genic enhancers	Primary T cells fromperipheralblood	blood
8	chr17:33823400-33835600	Weak transcription	GM12878-XiMat	blood
9	chr17:33823800-33828600	Weak transcription	Pancreas	Pancrea
10	chr17:33824200-33825400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr17:33824200-33825600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr17:33824200-33826000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
13	chr17:33824200-33827200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr17:33824200-33834800	Weak transcription	Spleen	Spleen
15	chr17:33824400-33825200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
16	chr17:33824400-33827600	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr17:33824600-33825200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
18	chr17:33824600-33825200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
19	chr17:33824600-33825200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
20	chr17:33824600-33825800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
21	chr17:33824800-33825200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
22	chr17:33824800-33825600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
23	chr17:33824800-33825600	Active TSS	Right Atrium	heart
24	chr17:33824800-33825600	Bivalent Enhancer	HUVEC	blood vessel
25	chr17:33824800-33826200	Bivalent Enhancer	Fetal Thymus	thymus
26	chr17:33824800-33826800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
27	chr17:33824800-33829000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr17:33825000-33825200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr17:33825000-33825200	Bivalent Enhancer	Primary B cells from cord blood	blood
30	chr17:33825000-33825200	Bivalent/Poised TSS	Primary hematopoietic stem cells short term culture	blood
31	chr17:33825000-33825200	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
32	chr17:33825000-33825200	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr17:33825000-33825200	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
34	chr17:33825000-33825400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
35	chr17:33825000-33825400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
36	chr17:33825000-33825400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr17:33825000-33825400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr17:33825000-33825400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr17:33825000-33825400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr17:33825000-33825400	Bivalent Enhancer	Aorta	Aorta
41	chr17:33825000-33825400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
42	chr17:33825000-33825400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
43	chr17:33825000-33825400	Bivalent Enhancer	Placenta	Placenta
44	chr17:33825000-33825400	Flanking Bivalent TSS/Enh	Thymus	Thymus
45	chr17:33825000-33825400	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
46	chr17:33825000-33825600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
47	chr17:33825000-33825600	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr17:33825000-33825600	Bivalent Enhancer	Brain Hippocampus Middle	brain
49	chr17:33825000-33825600	Bivalent Enhancer	Right Ventricle	heart
50	chr17:33825000-33825800	Bivalent/Poised TSS	Primary T cells from cord blood	blood

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