Variant report

Variant	rs562633792
Chromosome Location	chr10:23633078-23633079
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:13)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:13 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr10:23632708-23633724	H1-hESC	embryonic stem cell:	n/a	chr10:23633044-23633054
2	EGR1	chr10:23632797-23633222	ECC-1	luminal epithelium:	n/a	chr10:23633050-23633060 chr10:23633039-23633052 chr10:23633035-23633057 chr10:23633041-23633051 chr10:23633039-23633052
3	POLR2A	chr10:23632721-23633093	H1-neurons	neurons:	n/a	n/a
4	ZNF143	chr10:23632881-23633449	H1-hESC	embryonic stem cell:	n/a	chr10:23633048-23633058
5	EGR1	chr10:23632816-23633102	ECC-1	luminal epithelium:	n/a	chr10:23633050-23633060 chr10:23633039-23633052 chr10:23633035-23633057 chr10:23633041-23633051 chr10:23633039-23633052
6	ZNF263	chr10:23632432-23633834	HEK293-T-REx	kidney:	n/a	n/a
7	MXI1	chr10:23632818-23633087	H1-hESC	embryonic stem cell:	n/a	n/a
8	MAX	chr10:23632706-23633078	H1-hESC	embryonic stem cell:	n/a	chr10:23633044-23633054
9	CHD2	chr10:23632845-23633445	H1-hESC	embryonic stem cell:	n/a	n/a
10	MAX	chr10:23632824-23633653	H1-hESC	embryonic stem cell:	n/a	chr10:23633044-23633054
11	SIN3AK20	chr10:23632738-23633093	H1-hESC	embryonic stem cell:	n/a	n/a
12	POLR2A	chr10:23632771-23633765	H1-neurons	neurons:	n/a	n/a
13	SIN3A	chr10:23632621-23633849	H1-hESC	embryonic stem cell:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:23633066-23633116	ProgFib	skin:	n/a
2	chr10:23633066-23633116	HRPEpiC	eye:	n/a
3	chr10:23633066-23633116	MCF-7	breast:	n/a
4	chr10:23633066-23633116	U87	brain:	n/a
5	chr10:23633066-23633116	HRCEpiC	kidney:	n/a
6	chr10:23633066-23633116	Jurkat	blood:	n/a
7	chr10:23633066-23633116	AG09309	skin:	n/a
8	chr10:23633066-23633116	AoSMC	blood vessel:	n/a
9	chr10:23633066-23633116	HEK293	kidney:	embryo
10	chr10:23633066-23633116	ECC-1	luminal epithelium:	n/a
11	chr10:23633066-23633116	PrEC	prostate:	n/a
12	chr10:23633066-23633116	HCT-116	colon:	n/a
13	chr10:23633066-23633116	ovcar-3	ovarian:	n/a
14	chr10:23633066-23633116	AG09319	gingival:	n/a
15	chr10:23633066-23633116	HepG2	liver:	n/a
16	chr10:23633066-23633116	SKMC	muscle:	n/a
17	chr10:23633066-23633116	Caco-2	colon:	n/a
18	chr10:23633066-23633116	NHBE	bronchial:	n/a
19	chr10:23633066-23633116	NH-A	brain:	n/a
20	chr10:23633066-23633116	A549	lung:	n/a
21	chr10:23633066-23633116	GM12892	blood:	n/a
22	chr10:23633066-23633116	GM12878	blood:	n/a
23	chr10:23633066-23633116	AG04449	skin:	fetal
24	chr10:23633066-23633116	HMEC	breast:	n/a
25	chr10:23633066-23633116	AG10803	skin:	n/a
26	chr10:23633066-23633116	BJ	skin:	n/a
27	chr10:23633066-23633116	LNCaP	prostate:	n/a
28	chr10:23633066-23633116	NB4	blood:	n/a
29	chr10:23633066-23633116	Hepatocyte	liver:	n/a
30	chr10:23633066-23633116	NHDF-neo	bronchial:	n/a
31	chr10:23633066-23633116	GM12891	blood:	n/a
32	chr10:23633066-23633116	BE2_C	brain:	n/a
33	chr10:23633066-23633116	HCPEpiC	choroid plexus:	n/a
34	chr10:23633066-23633116	Hela-S3	cervix:	n/a
35	chr10:23633066-23633116	IMR90	lung:	fetal
36	chr10:23633066-23633116	AG04450	lung:	fetal
37	chr10:23633066-23633116	GM19239	blood:	n/a
38	chr10:23633066-23633116	HCF	heart:	n/a
39	chr10:23633066-23633116	CMK	blood:	n/a
40	chr10:23633066-23633116	GM06990	blood:	n/a
41	chr10:23633066-23633116	T-47D	breast:	n/a
42	chr10:23633066-23633116	RPTEC	kidney:	n/a
43	chr10:23633066-23633116	SK-N-SH	brain:	n/a
44	chr10:23633066-23633116	HAEpiC	amniotic membrane:	n/a
45	chr10:23633066-23633116	SAEC	small airway:	n/a
46	chr10:23633066-23633116	MCF10A-Er-Src	breast:	n/a
47	chr10:23633066-23633116	SK-N-MC	brain:	n/a
48	chr10:23633066-23633116	HNPCEpiC	eye:	n/a
49	chr10:23633066-23633116	HL-60	blood:	n/a
50	chr10:23633066-23633116	HIPEpiC	eye:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23631888..23635089-chr10:23727661..23730060,4	MCF-7	breast:

No data

Variant related genes	Relation type
C10orf67	TF binding region
C10orf67	CpG island
ENSG00000165312	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3357321	chr10:23631971-23634519	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3321964	chr10:23632396-23633894	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23630400-23633200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr10:23630400-23633200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr10:23630600-23633200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr10:23631400-23633400	Enhancers	Fetal Heart	heart
5	chr10:23632000-23633400	Enhancers	Lung	lung
6	chr10:23632000-23634000	Active TSS	Brain Hippocampus Middle	brain
7	chr10:23632200-23633600	Active TSS	Brain Angular Gyrus	brain
8	chr10:23632200-23633800	Weak transcription	Hela-S3	cervix
9	chr10:23632200-23634000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
10	chr10:23632200-23634000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
11	chr10:23632400-23633200	Active TSS	Brain Germinal Matrix	brain
12	chr10:23632400-23633400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr10:23632400-23633400	Active TSS	Duodenum Mucosa	Duodenum
14	chr10:23632400-23633400	Active TSS	Duodenum Smooth Muscle	Duodenum
15	chr10:23632400-23633400	Bivalent/Poised TSS	Fetal Intestine Small	intestine
16	chr10:23632400-23633400	Active TSS	Skeletal Muscle Male	skeletal muscle
17	chr10:23632400-23633600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr10:23632400-23633800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr10:23632400-23633800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr10:23632400-23633800	Active TSS	Fetal Brain Female	brain
21	chr10:23632400-23634000	Active TSS	Brain Cingulate Gyrus	brain
22	chr10:23632400-23634000	Active TSS	Brain Inferior Temporal Lobe	brain
23	chr10:23632600-23633200	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr10:23632600-23633200	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
25	chr10:23632600-23633200	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
26	chr10:23632600-23633200	Enhancers	Placenta Amnion	Placenta Amnion
27	chr10:23632600-23633400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr10:23632600-23633400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr10:23632600-23633400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr10:23632600-23633400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr10:23632600-23633400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr10:23632600-23633400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr10:23632600-23633400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr10:23632600-23633400	Active TSS	Colonic Mucosa	Colon
35	chr10:23632600-23633400	Active TSS	Skeletal Muscle Female	skeletal muscle
36	chr10:23632600-23633400	Active TSS	HSMM	muscle
37	chr10:23632600-23633600	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr10:23632600-23633600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
39	chr10:23632600-23633600	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
40	chr10:23632600-23633600	Active TSS	Colon Smooth Muscle	Colon
41	chr10:23632600-23633600	Active TSS	Ovary	ovary
42	chr10:23632600-23633600	Active TSS	Rectal Smooth Muscle	rectum
43	chr10:23632600-23633600	Active TSS	Osteobl	bone
44	chr10:23632600-23633800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
45	chr10:23632600-23633800	Active TSS	H9 Cell Line	embryonic stem cell
46	chr10:23632600-23633800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
47	chr10:23632600-23633800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr10:23632600-23633800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr10:23632600-23633800	Active TSS	Pancreatic Islets	Pancreatic Islet
50	chr10:23632600-23633800	Active TSS	Right Atrium	heart

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