Variant report

Variant	rs562644541
Chromosome Location	chr5:111940205-111940206
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:111938998..111941379-chr5:111945188..111946889,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:36 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv20349	chr5:111915807-111944317	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv819717	chr5:111935623-111947507	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv823178	chr5:111938702-111942771	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv821026	chr5:111938702-111945437	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv599373	chr5:111938738-111944473	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv1836543	chr5:111939151-111944473	Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
8	esv1836690	chr5:111939151-111944473	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
9	esv1837328	chr5:111939151-111944473	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
10	esv1837524	chr5:111939151-111944473	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
11	esv1837571	chr5:111939151-111944473	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
12	esv1837969	chr5:111939151-111944473	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
13	nsv823179	chr5:111939196-111942771	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
14	nsv823180	chr5:111939337-111947460	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
15	nsv823181	chr5:111939479-111942771	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
16	nsv823182	chr5:111939479-111947460	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
17	esv16282	chr5:111939492-111944907	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
18	nsv599374	chr5:111939614-111942172	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
19	nsv599375	chr5:111939614-111942769	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
20	nsv599376	chr5:111939614-111942849	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
21	nsv599377	chr5:111939614-111943114	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
22	nsv599378	chr5:111939614-111943935	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
23	nsv599379	chr5:111939614-111944295	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
24	esv1836004	chr5:111939614-111944449	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
25	esv1838492	chr5:111939614-111944449	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
26	nsv599380	chr5:111939614-111944449	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
27	esv1836219	chr5:111939614-111944473	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
28	esv1837456	chr5:111939614-111944473	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
29	esv1839406	chr5:111939614-111944473	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
30	esv1839469	chr5:111939614-111944473	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
31	esv1840814	chr5:111939614-111944473	Weak transcription Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
32	esv1840838	chr5:111939614-111944473	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
33	nsv599381	chr5:111939614-111944473	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
34	nsv599382	chr5:111940021-111942849	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
35	nsv599383	chr5:111940021-111944295	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
36	nsv599384	chr5:111940021-111944449	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111938800-111941000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr5:111938800-111941000	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr5:111938800-111941200	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr5:111939000-111941000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr5:111940000-111940600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr5:111940000-111941200	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr5:111940000-111941200	Enhancers	Fetal Intestine Large	intestine
8	chr5:111940000-111941400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr5:111940200-111941000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:111940200-111941000	Enhancers	HepG2	liver

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