Variant report

Variant	rs562653054
Chromosome Location	chr9:96339531-96339532
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:101964530..101966057-chr9:96338377..96341052,2	MCF-7	breast:
2	chr9:96207292..96208805-chr9:96339241..96341688,2	MCF-7	breast:
3	chr9:95818234..95820974-chr9:96339140..96341685,2	MCF-7	breast:
4	chr15:64672393..64674955-chr9:96338463..96341441,2	MCF-7	breast:
5	chr9:96213158..96214882-chr9:96338001..96341678,3	K562	blood:
6	chr9:96211528..96214948-chr9:96337573..96343441,10	MCF-7	breast:
7	chr9:96211672..96218862-chr9:96335264..96341672,16	MCF-7	breast:
8	chr9:96337024..96339848-chr9:96617971..96619932,2	MCF-7	breast:
9	chr9:95895154..95898000-chr9:96338001..96340609,3	MCF-7	breast:
10	chr9:95856094..95858375-chr9:96337008..96340445,3	MCF-7	breast:
11	chr8:144819610..144821971-chr9:96337841..96340310,2	MCF-7	breast:
12	chr14:52455551..52457081-chr9:96338294..96340039,2	MCF-7	breast:
13	chr9:96289339..96291734-chr9:96339194..96341014,2	MCF-7	breast:
14	chr9:95894803..95898160-chr9:96337820..96340366,3	MCF-7	breast:
15	chr9:96323290..96325963-chr9:96339113..96341830,2	MCF-7	breast:
16	chr9:96214499..96217099-chr9:96338317..96340265,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000131669	Chromatin interaction
ENSG00000231990	Chromatin interaction
ENSG00000048828	Chromatin interaction
ENSG00000166803	Chromatin interaction
ENSG00000203499	Chromatin interaction
ENSG00000223446	Chromatin interaction
ENSG00000188938	Chromatin interaction
ENSG00000164924	Chromatin interaction
ENSG00000087302	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041803	chr9:96299639-96342013	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv824984	chr9:96310933-96375022	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv824985	chr9:96337735-96340349	Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
4	esv3359621	chr9:96337881-96340629	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
5	esv3422729	chr9:96337956-96340504	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96337600-96339600	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr9:96337600-96340000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr9:96337600-96340000	Active TSS	Ovary	ovary
4	chr9:96337600-96340000	Active TSS	A549	lung
5	chr9:96337600-96340200	Active TSS	Aorta	Aorta
6	chr9:96337600-96340400	Active TSS	H9 Cell Line	embryonic stem cell
7	chr9:96337600-96340400	Active TSS	Fetal Kidney	kidney
8	chr9:96337600-96340600	Active TSS	HSMMtube	muscle
9	chr9:96337600-96341000	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr9:96337800-96339800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:96337800-96339800	Active TSS	Right Atrium	heart
12	chr9:96337800-96339800	Active TSS	Osteobl	bone
13	chr9:96337800-96340000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr9:96337800-96340000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr9:96337800-96340000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr9:96337800-96340000	Active TSS	Colon Smooth Muscle	Colon
17	chr9:96337800-96340000	Active TSS	Fetal Lung	lung
18	chr9:96337800-96340000	Active TSS	HSMM	muscle
19	chr9:96337800-96340000	Active TSS	NHDF-Ad	bronchial
20	chr9:96337800-96340200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr9:96337800-96340200	Active TSS	Small Intestine	intestine
22	chr9:96337800-96340400	Active TSS	iPS-15b Cell Line	embryonic stem cell
23	chr9:96338000-96339600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr9:96338000-96339600	Active TSS	Primary hematopoietic stem cells	blood
25	chr9:96338000-96339600	Active TSS	Spleen	Spleen
26	chr9:96338000-96339800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr9:96338000-96339800	Active TSS	iPS-18 Cell Line	embryonic stem cell
28	chr9:96338000-96339800	Active TSS	Breast Myoepithelial Primary Cells	Breast
29	chr9:96338000-96339800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr9:96338000-96339800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr9:96338000-96339800	Active TSS	Colonic Mucosa	Colon
32	chr9:96338000-96339800	Active TSS	Fetal Muscle Leg	muscle
33	chr9:96338000-96339800	Active TSS	Fetal Stomach	stomach
34	chr9:96338000-96339800	Active TSS	Rectal Mucosa Donor 31	rectum
35	chr9:96338000-96339800	Active TSS	Sigmoid Colon	Sigmoid Colon
36	chr9:96338000-96339800	Active TSS	Hela-S3	cervix
37	chr9:96338000-96339800	Active TSS	NH-A	brain
38	chr9:96338000-96340000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr9:96338000-96340000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr9:96338000-96340000	Active TSS	HUES6 Cell Line	embryonic stem cell
41	chr9:96338000-96340000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr9:96338000-96340000	Active TSS	Muscle Satellite Cultured Cells	--
43	chr9:96338000-96340000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr9:96338000-96340000	Active TSS	Brain Angular Gyrus	brain
45	chr9:96338000-96340000	Active TSS	Brain Anterior Caudate	brain
46	chr9:96338000-96340000	Active TSS	Brain Inferior Temporal Lobe	brain
47	chr9:96338000-96340000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
48	chr9:96338000-96340000	Active TSS	Brain Substantia Nigra	brain
49	chr9:96338000-96340000	Active TSS	Duodenum Mucosa	Duodenum
50	chr9:96338000-96340000	Active TSS	Esophagus	oesophagus

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