Variant report

Variant	rs562657879
Chromosome Location	chr3:59843148-59843149
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014601	chr3:59666609-59888166	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv428085	chr3:59782509-60070116	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv460564	chr3:59821071-59927727	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv590384	chr3:59821071-59927727	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv460565	chr3:59842644-59877988	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv470616	chr3:59842644-59877988	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv590385	chr3:59842644-59877988	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59827200-59843400	Weak transcription	Dnd41	blood
2	chr3:59834000-59848000	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr3:59842400-59843400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:59842600-59843600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr3:59842600-59843800	Enhancers	Fetal Thymus	thymus
6	chr3:59842800-59843200	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr3:59842800-59843400	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr3:59842800-59843400	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr3:59842800-59843600	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr3:59842800-59843600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr3:59842800-59843600	Enhancers	Fetal Intestine Small	intestine
12	chr3:59842800-59843800	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr3:59842800-59844000	Enhancers	Primary T cells from cord blood	blood
14	chr3:59842800-59844000	Enhancers	Thymus	Thymus
15	chr3:59843000-59843200	Flanking Active TSS	A549	lung
16	chr3:59843000-59843600	Enhancers	Fetal Heart	heart
17	chr3:59843000-59843800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr3:59843000-59844000	Enhancers	Stomach Mucosa	stomach
19	chr3:59843000-59844600	Enhancers	Primary T killer memory cells from peripheral blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links