Variant report

Variant	rs56266490
Chromosome Location	chr7:127775129-127775130
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:127773375..127775632-chr7:127776520..127778934,2	K562	blood:
2	chr7:127770664..127774572-chr7:127774612..127778986,4	K562	blood:
3	chr7:127290259..127292033-chr7:127774841..127777045,2	K562	blood:
4	chr7:127224953..127226743-chr7:127774765..127776324,2	K562	blood:
5	chr7:127774436..127777299-chr7:127779150..127782660,3	K562	blood:
6	chr7:127770457..127772622-chr7:127774413..127777391,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000179562	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12154534	0.84[EUR][1000 genomes]
rs12537840	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022385	chr7:127246656-127971194	Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv539120	chr7:127246656-127971194	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127774600-127775200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
2	chr7:127774600-127775200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr7:127774600-127775200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr7:127774600-127775400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
5	chr7:127774600-127775400	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
6	chr7:127774600-127775400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
7	chr7:127774600-127775400	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr7:127774600-127775400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr7:127774600-127775400	Active TSS	Brain Inferior Temporal Lobe	brain
10	chr7:127774600-127775400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
11	chr7:127774600-127775400	Bivalent Enhancer	Fetal Muscle Leg	muscle
12	chr7:127774600-127775400	Active TSS	Right Atrium	heart
13	chr7:127774600-127775600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
14	chr7:127774600-127775600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
15	chr7:127774600-127775600	Bivalent Enhancer	Fetal Intestine Small	intestine
16	chr7:127774600-127775600	Bivalent Enhancer	Fetal Stomach	stomach
17	chr7:127774600-127775800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr7:127774600-127776000	Bivalent Enhancer	Placenta	Placenta
19	chr7:127774600-127776600	Active TSS	Pancreatic Islets	Pancreatic Islet
20	chr7:127774600-127776800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
21	chr7:127774800-127775200	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr7:127774800-127775200	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
23	chr7:127774800-127775200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
24	chr7:127774800-127775200	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
25	chr7:127774800-127775200	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr7:127774800-127775200	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
27	chr7:127774800-127775200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
28	chr7:127774800-127775200	Bivalent Enhancer	A549	lung
29	chr7:127774800-127775400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
30	chr7:127774800-127775400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
31	chr7:127774800-127775400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
32	chr7:127774800-127775400	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
33	chr7:127774800-127775400	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
34	chr7:127774800-127775400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr7:127774800-127775400	Bivalent Enhancer	Fetal Brain Male	brain
36	chr7:127774800-127775400	Enhancers	Right Ventricle	heart
37	chr7:127774800-127775400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
38	chr7:127774800-127775400	Bivalent Enhancer	Stomach Smooth Muscle	stomach
39	chr7:127774800-127775400	Bivalent Enhancer	HSMM	muscle
40	chr7:127774800-127775600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr7:127774800-127775600	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
42	chr7:127774800-127775600	Bivalent Enhancer	Fetal Thymus	thymus
43	chr7:127774800-127775600	Enhancers	Pancreas	Pancrea
44	chr7:127774800-127775600	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
45	chr7:127774800-127775600	Bivalent Enhancer	NH-A	brain
46	chr7:127774800-127775800	Flanking Bivalent TSS/Enh	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr7:127774800-127775800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
48	chr7:127774800-127776000	Bivalent Enhancer	Stomach Mucosa	stomach
49	chr7:127774800-127776600	Bivalent Enhancer	Fetal Heart	heart
50	chr7:127774800-127776800	Bivalent/Poised TSS	Fetal Brain Female	brain

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