Variant report

Variant	rs56267085
Chromosome Location	chr21:15892244-15892245
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr21:15886516..15889058-chr21:15891380..15893121,2	K562	blood:
2	chr21:15882543..15884938-chr21:15891850..15893710,2	K562	blood:
3	chr21:15882543..15885229-chr21:15891850..15893526,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs55753627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56373147	1.00[ASN][1000 genomes]
rs60792423	1.00[ASN][1000 genomes]
rs73344176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73344187	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73894239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059591	chr21:15835325-15969195	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1056423	chr21:15838309-15948474	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv544376	chr21:15855470-15948474	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1065823	chr21:15863224-15948474	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1057934	chr21:15863224-15969195	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv913405	chr21:15875108-15899085	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv913406	chr21:15875108-15905580	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	esv1796464	chr21:15884475-15900198	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv1800015	chr21:15884475-15906590	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv913407	chr21:15885274-15899085	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv913408	chr21:15885274-15905580	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv913409	chr21:15885274-15908642	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv459097	chr21:15886919-15902978	Strong transcription Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv587045	chr21:15886919-15902978	Flanking Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv459098	chr21:15886919-15906590	Enhancers Genic enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	nsv587046	chr21:15886919-15906590	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
17	nsv913410	chr21:15889553-15906590	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:15853400-15905400	Weak transcription	HUVEC	blood vessel
2	chr21:15875800-15894000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr21:15879200-15892600	Strong transcription	Primary T helper cells fromperipheralblood	blood
4	chr21:15879400-15892800	Strong transcription	Primary T helper cells PMA-I stimulated	--
5	chr21:15879800-15892800	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr21:15880800-15892800	Strong transcription	K562	blood
7	chr21:15881800-15893600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr21:15883000-15892800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr21:15883200-15892800	Weak transcription	Thymus	Thymus
10	chr21:15883200-15893200	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr21:15883200-15898600	Weak transcription	Spleen	Spleen
12	chr21:15883600-15895200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr21:15884400-15892800	Weak transcription	Fetal Thymus	thymus
14	chr21:15888800-15892600	Weak transcription	Primary B cells from cord blood	blood
15	chr21:15888800-15892800	Weak transcription	Primary B cells from peripheral blood	blood
16	chr21:15889000-15892800	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr21:15889200-15892800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr21:15889400-15892600	Genic enhancers	Dnd41	blood
19	chr21:15889400-15893000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr21:15889600-15893000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr21:15891000-15892400	Weak transcription	Primary T cells from cord blood	blood
22	chr21:15891000-15892400	Enhancers	Primary hematopoietic stem cells	blood
23	chr21:15891000-15892400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr21:15891000-15892400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr21:15891000-15892800	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr21:15891000-15892800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr21:15891200-15892800	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr21:15891400-15892800	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr21:15891400-15892800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr21:15891400-15893200	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
31	chr21:15891800-15892400	Enhancers	Monocytes-CD14+_RO01746	blood
32	chr21:15892200-15892600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr21:15892200-15892800	Strong transcription	GM12878-XiMat	blood

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