Variant report

Variant	rs56267739
Chromosome Location	chr10:4322489-4322490
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:4232879..4234398-chr10:4321795..4324603,2	MCF-7	breast:
2	chr10:3332143..3332822-chr10:4321742..4322501,2	MCF-7	breast:
3	chr10:4311326..4314084-chr10:4320615..4323215,2	MCF-7	breast:
4	chr10:3824995..3829736-chr10:4319547..4324748,15	MCF-7	breast:
5	chr10:3735102..3736673-chr10:4321276..4322896,2	MCF-7	breast:
6	chr10:4320010..4324018-chr10:4702839..4706546,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs56366641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59484440	1.00[AMR][1000 genomes]
rs59972474	1.00[AMR][1000 genomes]
rs74114740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799113	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1800792	chr10:4259123-4332824	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1820112	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1822419	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1839293	chr10:4259123-4332824	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv1841782	chr10:4259123-4332824	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv2757363	chr10:4286880-4323493	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv2759728	chr10:4286880-4323493	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv894785	chr10:4306421-4372629	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4309600-4323000	Weak transcription	Lung	lung
2	chr10:4309600-4324600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr10:4313000-4322600	Weak transcription	HMEC	breast
4	chr10:4316200-4323000	Weak transcription	Gastric	stomach
5	chr10:4318800-4323000	Weak transcription	Psoas Muscle	Psoas
6	chr10:4319600-4327600	Enhancers	Fetal Lung	lung
7	chr10:4320400-4327800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr10:4320400-4327800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr10:4320800-4322600	Enhancers	Duodenum Smooth Muscle	Duodenum
10	chr10:4320800-4322600	Enhancers	Fetal Heart	heart
11	chr10:4320800-4323200	Enhancers	Fetal Stomach	stomach
12	chr10:4320800-4326600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr10:4320800-4327400	Enhancers	Stomach Smooth Muscle	stomach
14	chr10:4321000-4323000	Enhancers	Fetal Muscle Leg	muscle
15	chr10:4321200-4323400	Enhancers	Spleen	Spleen
16	chr10:4321200-4325400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr10:4321200-4325600	Enhancers	Ovary	ovary
18	chr10:4321200-4326200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr10:4321200-4327600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:4321400-4322600	Enhancers	Placenta	Placenta
21	chr10:4321400-4322800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr10:4321400-4323000	Enhancers	Muscle Satellite Cultured Cells	--
23	chr10:4321400-4323800	Enhancers	Colon Smooth Muscle	Colon
24	chr10:4321400-4323800	Enhancers	Rectal Smooth Muscle	rectum
25	chr10:4321400-4324000	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr10:4321400-4324000	Enhancers	Osteobl	bone
27	chr10:4321400-4324400	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr10:4321400-4325000	Enhancers	Sigmoid Colon	Sigmoid Colon
29	chr10:4321400-4325400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr10:4321400-4327000	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr10:4321600-4323800	Enhancers	Adipose Nuclei	Adipose
32	chr10:4321600-4324000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr10:4321600-4324400	Enhancers	Hela-S3	cervix
34	chr10:4321600-4326200	Enhancers	NHDF-Ad	bronchial
35	chr10:4321600-4327800	Enhancers	NHLF	lung
36	chr10:4321800-4322800	Weak transcription	Aorta	Aorta
37	chr10:4321800-4323000	Enhancers	Rectal Mucosa Donor 29	rectum
38	chr10:4322000-4323400	Enhancers	Duodenum Mucosa	Duodenum
39	chr10:4322000-4323400	Enhancers	Right Ventricle	heart
40	chr10:4322000-4323600	Enhancers	HSMM	muscle
41	chr10:4322000-4324400	Enhancers	NH-A	brain
42	chr10:4322000-4324600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr10:4322200-4322800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr10:4322200-4323000	Weak transcription	Pancreas	Pancrea
45	chr10:4322200-4323200	Enhancers	Brain Inferior Temporal Lobe	brain
46	chr10:4322200-4323800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr10:4322200-4324000	Enhancers	HUVEC	blood vessel
48	chr10:4322200-4325000	Weak transcription	HSMMtube	muscle
49	chr10:4322200-4326000	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr10:4322200-4326200	Weak transcription	Right Atrium	heart

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