Variant report

Variant	rs56268235
Chromosome Location	chr1:85300138-85300139
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:85286714..85290446-chr1:85296135..85300996,4	MCF-7	breast:
2	chr1:85299331..85301423-chr1:85313986..85316140,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs72716961	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72716999	1.00[AMR][1000 genomes]
rs72718711	1.00[AFR][1000 genomes]
rs72718732	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830448	chr1:85294094-85491110	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85289400-85330800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr1:85291200-85301000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:85294600-85300400	Weak transcription	Fetal Heart	heart
4	chr1:85296000-85300200	Weak transcription	NHLF	lung
5	chr1:85296600-85312800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr1:85298400-85300600	Enhancers	HUVEC	blood vessel
7	chr1:85298800-85301200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr1:85298800-85301400	Enhancers	Stomach Mucosa	stomach
9	chr1:85298800-85301600	Enhancers	Hela-S3	cervix
10	chr1:85299000-85300400	Enhancers	NHEK	skin
11	chr1:85299000-85300600	Enhancers	A549	lung
12	chr1:85299200-85301600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:85299200-85301600	Enhancers	HMEC	breast
14	chr1:85299400-85300800	Enhancers	NHDF-Ad	bronchial
15	chr1:85299400-85301000	Enhancers	Muscle Satellite Cultured Cells	--
16	chr1:85299400-85301200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr1:85299400-85301600	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr1:85299400-85302000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr1:85299600-85305200	Weak transcription	Pancreas	Pancrea
20	chr1:85299800-85300200	Weak transcription	Gastric	stomach
21	chr1:85299800-85300600	Enhancers	Liver	Liver
22	chr1:85300000-85300600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr1:85300000-85301000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr1:85300000-85301000	Enhancers	Osteobl	bone
25	chr1:85300000-85301600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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