Variant report

Variant	rs56268570
Chromosome Location	chr11:64288046-64288047
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs45615733	1.00[AMR][1000 genomes]
rs55653360	1.00[AMR][1000 genomes]
rs55697310	1.00[AMR][1000 genomes]
rs55737300	1.00[AMR][1000 genomes]
rs57037565	1.00[AMR][1000 genomes]
rs57437106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58127892	1.00[AMR][1000 genomes]
rs58851354	1.00[AMR][1000 genomes]
rs59651891	1.00[AMR][1000 genomes]
rs60080768	1.00[AMR][1000 genomes]
rs60914207	1.00[AMR][1000 genomes]
rs60971378	1.00[AMR][1000 genomes]
rs61578679	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832187	chr11:64121969-64312300	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1035485	chr11:64228847-64354869	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64287400-64290400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:64287800-64290000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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