Variant report

Variant	rs562693685
Chromosome Location	chr10:118766473-118766474
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr10:118766369-118767082	SK-N-SH	brain:	n/a	chr10:118766750-118766758 chr10:118766759-118766769 chr10:118766760-118766768 chr10:118766749-118766759 chr10:118766748-118766759 chr10:118766748-118766760 chr10:118766761-118766772 chr10:118766751-118766758 chr10:118766749-118766758 chr10:118766480-118766487 chr10:118766758-118766770 chr10:118766750-118766759
2	CEBPB	chr10:118766280-118766914	K562	blood:	n/a	n/a
3	JUND	chr10:118766393-118767085	SK-N-SH	brain:	n/a	chr10:118766750-118766758 chr10:118766759-118766769 chr10:118766760-118766768 chr10:118766749-118766759 chr10:118766748-118766759 chr10:118766748-118766760 chr10:118766761-118766772 chr10:118766751-118766758 chr10:118766749-118766758 chr10:118766480-118766487 chr10:118766758-118766770 chr10:118766750-118766759
4	JUN	chr10:118766104-118766974	K562	blood:	n/a	chr10:118766750-118766758 chr10:118766759-118766769 chr10:118766760-118766768 chr10:118766749-118766759 chr10:118766748-118766760 chr10:118766761-118766772 chr10:118766751-118766758 chr10:118766749-118766758 chr10:118766480-118766487 chr10:118766758-118766770 chr10:118766750-118766759
5	TEAD4	chr10:118766385-118766922	SK-N-SH	brain:	n/a	n/a
6	JUN	chr10:118766272-118766979	Hela-S3	cervix:	n/a	chr10:118766750-118766758 chr10:118766759-118766769 chr10:118766760-118766768 chr10:118766749-118766759 chr10:118766748-118766760 chr10:118766761-118766772 chr10:118766751-118766758 chr10:118766749-118766758 chr10:118766480-118766487 chr10:118766758-118766770 chr10:118766750-118766759
7	MAFF	chr10:118766223-118767132	K562	blood:	n/a	chr10:118766741-118766759
8	SP1	chr10:118765991-118767161	HCT-116	colon:	n/a	n/a
9	SP1	chr10:118765984-118767031	HCT-116	colon:	n/a	n/a
10	FOSL2	chr10:118766439-118767037	SK-N-SH	brain:	n/a	chr10:118766750-118766758 chr10:118766759-118766769 chr10:118766760-118766768 chr10:118766749-118766759 chr10:118766748-118766760 chr10:118766761-118766772 chr10:118766751-118766758 chr10:118766749-118766758 chr10:118766480-118766487 chr10:118766758-118766770 chr10:118766750-118766759
11	CEBPB	chr10:118766449-118767008	HCT-116	colon:	n/a	n/a
12	GATA3	chr10:118766421-118766865	MCF-7	breast:	n/a	chr10:118766761-118766770
13	NFIC	chr10:118766357-118767172	SK-N-SH	brain:	n/a	n/a
14	POLR2A	chr10:118766167-118766840	K562	blood:	n/a	n/a
15	EP300	chr10:118766456-118766950	Hela-S3	cervix:	n/a	chr10:118766750-118766759 chr10:118766749-118766758
16	JUN	chr10:118766081-118767108	K562	blood:	n/a	chr10:118766750-118766758 chr10:118766759-118766769 chr10:118766760-118766768 chr10:118766749-118766759 chr10:118766748-118766760 chr10:118766761-118766772 chr10:118766751-118766758 chr10:118766749-118766758 chr10:118766480-118766487 chr10:118766758-118766770 chr10:118766750-118766759
17	FOSL1	chr10:118766016-118767292	HCT-116	colon:	n/a	chr10:118766748-118766759 chr10:118766750-118766758 chr10:118766759-118766769 chr10:118766760-118766768 chr10:118766749-118766759 chr10:118766748-118766760 chr10:118766761-118766772 chr10:118766751-118766758 chr10:118766749-118766758 chr10:118766480-118766487 chr10:118766758-118766770 chr10:118766750-118766759
18	PBX3	chr10:118766358-118767110	SK-N-SH	brain:	n/a	n/a
19	FOS	chr10:118766364-118766949	MCF10A-Er-Src	breast:	n/a	chr10:118766750-118766758 chr10:118766759-118766769 chr10:118766760-118766768 chr10:118766749-118766759 chr10:118766748-118766760 chr10:118766761-118766772 chr10:118766751-118766758 chr10:118766748-118766759 chr10:118766749-118766758 chr10:118766480-118766487 chr10:118766758-118766770 chr10:118766750-118766759
20	ARID3A	chr10:118766207-118767025	K562	blood:	n/a	n/a
21	JUND	chr10:118766000-118767155	HCT-116	colon:	n/a	chr10:118766750-118766758 chr10:118766759-118766769 chr10:118766760-118766768 chr10:118766749-118766759 chr10:118766748-118766759 chr10:118766748-118766760 chr10:118766761-118766772 chr10:118766751-118766758 chr10:118766749-118766758 chr10:118766480-118766487 chr10:118766758-118766770 chr10:118766750-118766759
22	FOS	chr10:118766363-118767071	MCF10A-Er-Src	breast:	n/a	chr10:118766750-118766758 chr10:118766759-118766769 chr10:118766760-118766768 chr10:118766749-118766759 chr10:118766748-118766760 chr10:118766761-118766772 chr10:118766751-118766758 chr10:118766748-118766759 chr10:118766749-118766758 chr10:118766480-118766487 chr10:118766758-118766770 chr10:118766750-118766759
23	JUND	chr10:118766275-118767031	Hela-S3	cervix:	n/a	chr10:118766750-118766758 chr10:118766759-118766769 chr10:118766760-118766768 chr10:118766749-118766759 chr10:118766748-118766759 chr10:118766748-118766760 chr10:118766761-118766772 chr10:118766751-118766758 chr10:118766749-118766758 chr10:118766480-118766487 chr10:118766758-118766770 chr10:118766750-118766759
24	TCF12	chr10:118766378-118766986	SK-N-SH	brain:	n/a	n/a
25	GATA3	chr10:118766313-118767181	SK-N-SH	brain:	n/a	chr10:118766761-118766770
26	CBX3	chr10:118766020-118767106	HCT-116	colon:	n/a	n/a
27	FOSL2	chr10:118766238-118767121	A549	lung:	n/a	chr10:118766750-118766758 chr10:118766759-118766769 chr10:118766760-118766768 chr10:118766749-118766759 chr10:118766748-118766760 chr10:118766761-118766772 chr10:118766751-118766758 chr10:118766749-118766758 chr10:118766480-118766487 chr10:118766758-118766770 chr10:118766750-118766759
28	GATA3	chr10:118766270-118767033	MCF-7	breast:	n/a	chr10:118766761-118766770
29	EP300	chr10:118766456-118767123	SK-N-SH	brain:	n/a	chr10:118766750-118766759 chr10:118766749-118766758
30	TCF12	chr10:118766321-118767141	SK-N-SH	brain:	n/a	n/a
31	FOS	chr10:118766172-118766968	MCF10A-Er-Src	breast:	n/a	chr10:118766750-118766758 chr10:118766759-118766769 chr10:118766760-118766768 chr10:118766749-118766759 chr10:118766748-118766760 chr10:118766761-118766772 chr10:118766751-118766758 chr10:118766748-118766759 chr10:118766749-118766758 chr10:118766480-118766487 chr10:118766758-118766770 chr10:118766750-118766759
32	NFIC	chr10:118766403-118767201	ECC-1	luminal epithelium:	n/a	n/a
33	SRF	chr10:118766028-118767102	HCT-116	colon:	n/a	n/a
34	ZNF384	chr10:118765935-118767164	K562	blood:	n/a	n/a
35	CUX1	chr10:118766185-118766956	K562	blood:	n/a	n/a
36	FOSL1	chr10:118766077-118767122	HCT-116	colon:	n/a	chr10:118766748-118766759 chr10:118766750-118766758 chr10:118766759-118766769 chr10:118766760-118766768 chr10:118766749-118766759 chr10:118766748-118766760 chr10:118766761-118766772 chr10:118766751-118766758 chr10:118766749-118766758 chr10:118766480-118766487 chr10:118766758-118766770 chr10:118766750-118766759
37	GATA3	chr10:118766372-118767031	SK-N-SH	brain:	n/a	chr10:118766761-118766770
38	JUND	chr10:118766051-118767149	HCT-116	colon:	n/a	chr10:118766750-118766758 chr10:118766759-118766769 chr10:118766760-118766768 chr10:118766749-118766759 chr10:118766748-118766759 chr10:118766748-118766760 chr10:118766761-118766772 chr10:118766751-118766758 chr10:118766749-118766758 chr10:118766480-118766487 chr10:118766758-118766770 chr10:118766750-118766759
39	GATA3	chr10:118766418-118767033	A549	lung:	n/a	chr10:118766761-118766770
40	FOS	chr10:118766366-118767015	HUVEC	blood vessel:	n/a	chr10:118766750-118766758 chr10:118766759-118766769 chr10:118766760-118766768 chr10:118766749-118766759 chr10:118766748-118766760 chr10:118766761-118766772 chr10:118766751-118766758 chr10:118766748-118766759 chr10:118766749-118766758 chr10:118766480-118766487 chr10:118766758-118766770 chr10:118766750-118766759
41	GATA3	chr10:118766358-118766896	MCF-7	breast:	n/a	chr10:118766761-118766770
42	E2F4	chr10:118766297-118767185	MCF10A-Er-Src	breast:	n/a	n/a
43	FOSL2	chr10:118766418-118767099	MCF-7	breast:	n/a	chr10:118766750-118766758 chr10:118766759-118766769 chr10:118766760-118766768 chr10:118766749-118766759 chr10:118766748-118766760 chr10:118766761-118766772 chr10:118766751-118766758 chr10:118766749-118766758 chr10:118766480-118766487 chr10:118766758-118766770 chr10:118766750-118766759
44	EP300	chr10:118766378-118767132	K562	blood:	n/a	chr10:118766750-118766759 chr10:118766749-118766758

No.	Distal block	Cell Line	Cell type
1	chr10:118763331..118765453-chr10:118765627..118768169,2	MCF-7	breast:
2	chr10:118765114..118768175-chr10:118770999..118774519,3	K562	blood:
3	chr10:118718724..118721628-chr10:118764683..118766816,3	MCF-7	breast:

Variant related genes	Relation type
KIAA1598	TF binding region
ENSG00000187164	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755506	chr10:118748764-118800107	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
2	esv3525989	chr10:118764562-118770560	Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	n/a
3	esv3525990	chr10:118765187-118770410	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	n/a
4	esv3525991	chr10:118765187-118770410	Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	n/a
5	esv11358	chr10:118766138-118768926	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv947704	chr10:118766293-118767918	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118765400-118766800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr10:118765600-118766600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:118765600-118766600	Weak transcription	Stomach Mucosa	stomach
4	chr10:118765600-118766800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr10:118765600-118766800	Enhancers	HUVEC	blood vessel
6	chr10:118765600-118767000	Enhancers	Brain Substantia Nigra	brain
7	chr10:118765600-118767200	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr10:118765800-118766800	Enhancers	HepG2	liver
9	chr10:118766000-118766600	Enhancers	HMEC	breast
10	chr10:118766200-118766600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
11	chr10:118766200-118766800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr10:118766200-118767200	Flanking Active TSS	A549	lung
13	chr10:118766400-118766600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr10:118766400-118766600	Enhancers	Brain Germinal Matrix	brain
15	chr10:118766400-118766600	Enhancers	Brain Hippocampus Middle	brain
16	chr10:118766400-118766600	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr10:118766400-118766600	Enhancers	Hela-S3	cervix
18	chr10:118766400-118766600	Active TSS	K562	blood
19	chr10:118766400-118766600	Enhancers	NHDF-Ad	bronchial
20	chr10:118766400-118766800	Enhancers	ES-I3 Cell Line	embryonic stem cell

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