Variant report

Variant	rs56271050
Chromosome Location	chr13:110778789-110778790
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:110760613..110762563-chr13:110777021..110779083,2	MCF-7	breast:
2	chr13:110768940..110770470-chr13:110777999..110780195,2	K562	blood:
3	chr13:110769994..110772224-chr13:110776399..110779306,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs72652048	0.86[EUR][1000 genomes]
rs72652052	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901006	chr13:110748857-110806490	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv563099	chr13:110749252-110778894	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv456115	chr13:110756664-110806490	Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv563100	chr13:110756664-110806490	Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv1052147	chr13:110765635-110917782	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110772600-110781800	Enhancers	HMEC	breast
2	chr13:110774600-110780200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr13:110775000-110781400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr13:110775800-110778800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:110775800-110778800	Enhancers	Brain Hippocampus Middle	brain
6	chr13:110776000-110778800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr13:110776200-110780600	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr13:110776400-110778800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr13:110776600-110780000	Enhancers	Spleen	Spleen
10	chr13:110777000-110780200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr13:110777200-110779000	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr13:110777200-110779000	Weak transcription	Brain Anterior Caudate	brain
13	chr13:110777400-110778800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr13:110777400-110779000	Enhancers	Adipose Nuclei	Adipose
15	chr13:110777600-110778800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr13:110777600-110778800	Enhancers	Right Ventricle	heart
17	chr13:110777600-110779000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr13:110777600-110779200	Enhancers	Fetal Thymus	thymus
19	chr13:110777600-110779200	Enhancers	Lung	lung
20	chr13:110777600-110780600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr13:110777600-110780600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr13:110777800-110778800	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr13:110777800-110778800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr13:110777800-110778800	Enhancers	Right Atrium	heart
25	chr13:110777800-110778800	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr13:110777800-110779000	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr13:110777800-110779000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr13:110777800-110779000	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr13:110777800-110779800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr13:110777800-110780000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr13:110777800-110780200	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr13:110777800-110780600	Enhancers	Left Ventricle	heart
33	chr13:110778000-110778800	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr13:110778000-110778800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr13:110778000-110778800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr13:110778000-110778800	Enhancers	A549	lung
37	chr13:110778000-110780000	Enhancers	H1 Cell Line	embryonic stem cell
38	chr13:110778000-110780000	Enhancers	Brain Substantia Nigra	brain
39	chr13:110778000-110780000	Enhancers	Esophagus	oesophagus
40	chr13:110778000-110780000	Enhancers	Fetal Muscle Trunk	muscle
41	chr13:110778000-110782400	Enhancers	Fetal Muscle Leg	muscle
42	chr13:110778200-110778800	Enhancers	Brain Cingulate Gyrus	brain
43	chr13:110778200-110778800	Enhancers	Duodenum Smooth Muscle	Duodenum
44	chr13:110778200-110779000	Flanking Active TSS	NH-A	brain
45	chr13:110778200-110779400	Enhancers	Brain Germinal Matrix	brain
46	chr13:110778200-110779400	Enhancers	Hela-S3	cervix
47	chr13:110778200-110779800	Enhancers	HUES48 Cell Line	embryonic stem cell
48	chr13:110778200-110779800	Enhancers	Rectal Smooth Muscle	rectum
49	chr13:110778200-110780200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
50	chr13:110778200-110780600	Enhancers	NHLF	lung

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