Variant report

Variant	rs562711434
Chromosome Location	chr7:137356772-137356773
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AKR1D1-6	chr7:137356474-137357129	l_3488_chr7:137337580-137357129_testes

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv1812888	chr7:137283212-137366467	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv464731	chr7:137356651-137404781	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	nsv608466	chr7:137356651-137404781	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137343800-137359000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:137344000-137358000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:137350400-137356800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:137350400-137358000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr7:137350600-137358000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:137351400-137357000	Enhancers	HSMMtube	muscle
7	chr7:137352000-137357000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr7:137352800-137356800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr7:137353600-137357400	Enhancers	Muscle Satellite Cultured Cells	--
10	chr7:137354600-137357000	Enhancers	Fetal Brain Male	brain
11	chr7:137355000-137357000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr7:137355800-137356800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr7:137355800-137356800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr7:137355800-137356800	Weak transcription	Left Ventricle	heart
15	chr7:137355800-137357400	Enhancers	Osteobl	bone
16	chr7:137355800-137370600	Weak transcription	Aorta	Aorta
17	chr7:137356000-137361800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr7:137356200-137357800	Weak transcription	NHDF-Ad	bronchial
19	chr7:137356400-137356800	Weak transcription	Brain Anterior Caudate	brain
20	chr7:137356400-137365800	Weak transcription	HSMM	muscle
21	chr7:137356600-137357000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
22	chr7:137356600-137357000	Enhancers	Fetal Heart	heart
23	chr7:137356600-137358600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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