Variant report

Variant	rs562747567
Chromosome Location	chr15:59844431-59844432
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1044442	chr15:59765724-59955587	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv542403	chr15:59765724-59955587	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv976941	chr15:59843990-59846178	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59836400-59845400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:59839000-59847600	Weak transcription	Small Intestine	intestine
3	chr15:59841400-59848200	Enhancers	HepG2	liver
4	chr15:59841600-59861600	Weak transcription	Gastric	stomach
5	chr15:59843600-59844600	Enhancers	Hela-S3	cervix
6	chr15:59843600-59846000	Weak transcription	Stomach Mucosa	stomach
7	chr15:59843600-59851200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr15:59843800-59846000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr15:59843800-59846000	Weak transcription	Fetal Intestine Large	intestine
10	chr15:59843800-59846000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr15:59843800-59846200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr15:59844200-59846000	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr15:59844200-59847200	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr15:59844400-59845400	Weak transcription	A549	lung
15	chr15:59844400-59846000	Weak transcription	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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