Variant report

Variant	rs562752178
Chromosome Location	chr15:83776005-83776006
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:83775593-83776724	H1-neurons	neurons:	n/a	n/a
2	ZNF263	chr15:83775492-83776486	HEK293-T-REx	kidney:	n/a	n/a
3	CTCF	chr15:83775989-83776376	GM12878	blood:	n/a	chr15:83776087-83776096 chr15:83776165-83776178
4	CCNT2	chr15:83775901-83776854	K562	blood:	n/a	n/a
5	HMGN3	chr15:83775866-83777666	K562	blood:	n/a	n/a
6	ZBTB7A	chr15:83775783-83777007	ECC-1	luminal epithelium:	n/a	chr15:83776354-83776363
7	GABPA	chr15:83775744-83776059	K562	blood:	n/a	n/a
8	ZBTB7A	chr15:83775963-83776815	K562	blood:	n/a	chr15:83776354-83776363
9	POLR2A	chr15:83775922-83778028	HUVEC	blood vessel:	n/a	n/a
10	MAX	chr15:83775793-83776562	ECC-1	luminal epithelium:	n/a	chr15:83776309-83776318
11	MAX	chr15:83775633-83776630	A549	lung:	n/a	chr15:83776309-83776318
12	MAX	chr15:83775749-83776640	K562	blood:	n/a	chr15:83776309-83776318
13	CTCF	chr15:83775980-83776130	SAEC	small airway:	n/a	chr15:83776087-83776096
14	POLR2A	chr15:83775789-83777882	HUVEC	blood vessel:	n/a	n/a
15	CTCF	chr15:83775940-83776090	HMEC	breast:	n/a	n/a
16	GABPA	chr15:83775628-83776091	A549	lung:	n/a	n/a
17	CTCF	chr15:83776005-83776288	K562	blood:	n/a	chr15:83776087-83776096 chr15:83776165-83776178
18	RAD21	chr15:83776005-83776233	K562	blood:	n/a	n/a
19	YY1	chr15:83775964-83776518	K562	blood:	n/a	chr15:83776131-83776145 chr15:83776125-83776139 chr15:83776358-83776372 chr15:83776130-83776139 chr15:83776363-83776372 chr15:83776077-83776091
20	POLR2A	chr15:83775933-83777770	HUVEC	blood vessel:	n/a	n/a
21	ZBTB7A	chr15:83775963-83776696	K562	blood:	n/a	chr15:83776354-83776363
22	RAD21	chr15:83775732-83776296	H1-hESC	embryonic stem cell:	n/a	n/a
23	ZBTB7A	chr15:83775847-83776944	ECC-1	luminal epithelium:	n/a	chr15:83776354-83776363
24	UBTF	chr15:83775772-83776272	K562	blood:	n/a	n/a
25	MYC	chr15:83775548-83776369	K562	blood:	n/a	chr15:83776309-83776318
26	POLR2A	chr15:83775906-83776531	GM12878	blood:	n/a	n/a
27	ZNF384	chr15:83775426-83776048	K562	blood:	n/a	n/a
28	GABPA	chr15:83775676-83776680	K562	blood:	n/a	chr15:83776355-83776364 chr15:83776361-83776370 chr15:83776317-83776326 chr15:83776268-83776277
29	E2F6	chr15:83775884-83776567	K562	blood:	n/a	chr15:83776355-83776364 chr15:83776361-83776371 chr15:83776082-83776091 chr15:83776317-83776326 chr15:83776262-83776276 chr15:83776421-83776431
30	MYC	chr15:83775636-83776612	K562	blood:	n/a	chr15:83776309-83776318
31	ELF1	chr15:83775756-83776309	GM12878	blood:	n/a	chr15:83776133-83776142
32	CTCF	chr15:83775938-83776335	K562	blood:	n/a	chr15:83776087-83776096 chr15:83776165-83776178
33	E2F6	chr15:83775978-83776583	K562	blood:	n/a	chr15:83776355-83776364 chr15:83776361-83776371 chr15:83776082-83776091 chr15:83776317-83776326 chr15:83776262-83776276 chr15:83776421-83776431
34	GABPA	chr15:83775605-83776450	H1-hESC	embryonic stem cell:	n/a	chr15:83776355-83776364 chr15:83776361-83776370 chr15:83776317-83776326 chr15:83776268-83776277
35	POLR2A	chr15:83775657-83776454	K562	blood:	n/a	n/a
36	MAX	chr15:83775694-83776685	K562	blood:	n/a	chr15:83776309-83776318
37	POLR2A	chr15:83775985-83776593	GM15510	blood:	n/a	n/a
38	TCF3	chr15:83775973-83776553	GM12878	blood:	n/a	chr15:83776094-83776104 chr15:83776096-83776109
39	MAZ	chr15:83775659-83776536	K562	blood:	n/a	chr15:83776309-83776318
40	GATA1	chr15:83775312-83776113	PBDE	blood:	n/a	n/a
41	PAX5	chr15:83775907-83776446	GM12892	blood:	n/a	chr15:83776078-83776087 chr15:83776359-83776368
42	POLR2A	chr15:83775875-83776608	K562	blood:	n/a	n/a
43	BHLHE40	chr15:83775658-83776104	K562	blood:	n/a	chr15:83776083-83776099
44	CTCF	chr15:83775860-83776010	GM06990	blood:	n/a	n/a
45	CTCF	chr15:83776000-83776150	GM12866	blood:	n/a	chr15:83776087-83776096
46	RCOR1	chr15:83775505-83776504	K562	blood:	n/a	n/a
47	HEY1	chr15:83776001-83776580	K562	blood:	n/a	chr15:83776137-83776152 chr15:83776356-83776371 chr15:83776321-83776336 chr15:83776416-83776431
48	JUND	chr15:83775756-83776123	K562	blood:	n/a	chr15:83776024-83776038
49	HCFC1	chr15:83775767-83776321	K562	blood:	n/a	n/a
50	TBP	chr15:83776000-83776147	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:83734435..83737238-chr15:83775284..83776851,2	MCF-7	breast:
2	chr15:83734097..83737104-chr15:83774428..83777906,3	MCF-7	breast:
3	chr15:83731075..83738271-chr15:83771545..83781798,12	K562	blood:
4	chr15:83773353..83776031-chr15:83781914..83783541,2	K562	blood:
5	chr15:83712253..83714885-chr15:83774266..83777073,2	K562	blood:

Variant related genes	Relation type
TM6SF1	TF binding region
ENSG00000263643	Chromatin interaction
ENSG00000259308	Chromatin interaction
ENSG00000064726	Chromatin interaction
ENSG00000260579	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534418	chr15:83770116-83960718	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv3392859	chr15:83775373-83777921	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83775200-83776800	Active TSS	Skeletal Muscle Female	skeletal muscle
2	chr15:83775400-83776800	Active TSS	Primary T cells from cord blood	blood
3	chr15:83775400-83776800	Active TSS	Brain Cingulate Gyrus	brain
4	chr15:83775400-83776800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr15:83775400-83777000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
6	chr15:83775400-83777000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
7	chr15:83775400-83777000	Bivalent/Poised TSS	Fetal Intestine Small	intestine
8	chr15:83775600-83776200	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr15:83775600-83776200	Flanking Active TSS	Primary B cells from cord blood	blood
10	chr15:83775600-83776200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:83775600-83776200	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
12	chr15:83775600-83776400	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:83775600-83776400	Enhancers	Primary B cells from peripheral blood	blood
14	chr15:83775600-83776400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr15:83775600-83776400	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr15:83775600-83776400	Bivalent/Poised TSS	Fetal Brain Female	brain
17	chr15:83775600-83776600	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr15:83775600-83776600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
19	chr15:83775600-83776800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
20	chr15:83775600-83776800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr15:83775600-83776800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
22	chr15:83775600-83776800	Active TSS	Brain Anterior Caudate	brain
23	chr15:83775600-83776800	Active TSS	Pancreatic Islets	Pancreatic Islet
24	chr15:83775600-83776800	Bivalent/Poised TSS	NHEK	skin
25	chr15:83775600-83777000	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr15:83775600-83777000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
27	chr15:83775600-83777000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
28	chr15:83775600-83777000	Active TSS	Psoas Muscle	Psoas
29	chr15:83775600-83777000	Active TSS	Right Atrium	heart
30	chr15:83775600-83777400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
31	chr15:83775600-83778000	Flanking Active TSS	Primary hematopoietic stem cells	blood
32	chr15:83775600-83778000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr15:83775800-83776200	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr15:83775800-83776200	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr15:83775800-83776200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr15:83775800-83776200	Flanking Bivalent TSS/Enh	Primary mononuclear cells fromperipheralblood	Blood
37	chr15:83775800-83776200	Flanking Bivalent TSS/Enh	Thymus	Thymus
38	chr15:83775800-83776200	Bivalent/Poised TSS	NHLF	lung
39	chr15:83775800-83776400	Active TSS	Left Ventricle	heart
40	chr15:83775800-83776600	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr15:83775800-83776600	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr15:83775800-83776600	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
43	chr15:83775800-83776600	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast
44	chr15:83775800-83776600	Active TSS	Primary T helper naive cells fromperipheralblood	blood
45	chr15:83775800-83776600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr15:83775800-83776600	Active TSS	Brain Inferior Temporal Lobe	brain
47	chr15:83775800-83776600	Bivalent/Poised TSS	Esophagus	oesophagus
48	chr15:83775800-83776600	Flanking Active TSS	Pancreas	Pancrea
49	chr15:83775800-83776600	Bivalent/Poised TSS	NH-A	brain
50	chr15:83775800-83776800	Bivalent/Poised TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links