Variant report

Variant	rs562758900
Chromosome Location	chr15:78609601-78609602
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:78608718..78610938-chr15:78740404..78742745,2	K562	blood:
2	chr15:78609337..78610241-chr15:78707562..78708403,2	MCF-7	breast:
3	chr15:78607811..78611312-chr15:78615142..78617674,3	K562	blood:
4	chr15:78607009..78609839-chr15:78730177..78732441,2	MCF-7	breast:
5	chr15:78590360..78592369-chr15:78608915..78610812,2	K562	blood:
6	chr15:78609393..78610006-chr15:78707681..78708343,2	MCF-7	breast:
7	chr15:78608100..78610660-chr15:78729314..78732493,3	K562	blood:
8	chr15:78609276..78610228-chr15:78689311..78689907,2	MCF-7	breast:
9	chr15:78602775..78604649-chr15:78608220..78609992,2	K562	blood:
10	chr15:78601928..78604649-chr15:78608220..78609992,3	K562	blood:
11	chr15:78605682..78609938-chr15:78611708..78614528,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000140395	Chromatin interaction
ENSG00000136381	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
3	nsv833063	chr15:78605215-78754945	Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1052910	chr15:78608637-78707049	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78601400-78616800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:78607600-78610200	Enhancers	Fetal Stomach	stomach
3	chr15:78608000-78609800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:78608000-78609800	Enhancers	Brain Anterior Caudate	brain
5	chr15:78608000-78609800	Enhancers	Brain Hippocampus Middle	brain
6	chr15:78608000-78609800	Enhancers	Brain Substantia Nigra	brain
7	chr15:78608000-78609800	Enhancers	Placenta Amnion	Placenta Amnion
8	chr15:78608000-78610000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr15:78608200-78609800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr15:78608200-78609800	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr15:78608200-78609800	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr15:78608200-78609800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr15:78608200-78609800	Enhancers	Brain Cingulate Gyrus	brain
14	chr15:78608200-78609800	Enhancers	Colonic Mucosa	Colon
15	chr15:78608200-78610000	Enhancers	H1 Cell Line	embryonic stem cell
16	chr15:78608200-78610000	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr15:78608200-78610000	Enhancers	Fetal Intestine Large	intestine
18	chr15:78608200-78610000	Enhancers	Placenta	Placenta
19	chr15:78608200-78610000	Enhancers	Stomach Mucosa	stomach
20	chr15:78608200-78610200	Enhancers	Fetal Intestine Small	intestine
21	chr15:78608400-78609800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr15:78608600-78609800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr15:78608600-78609800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr15:78608600-78609800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr15:78608600-78609800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr15:78608600-78609800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr15:78608600-78609800	Enhancers	Fetal Heart	heart
28	chr15:78608600-78609800	Enhancers	Left Ventricle	heart
29	chr15:78608600-78609800	Enhancers	K562	blood
30	chr15:78608600-78609800	Enhancers	NHEK	skin
31	chr15:78608800-78610000	Flanking Active TSS	Hela-S3	cervix
32	chr15:78608800-78613400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr15:78609000-78609800	Enhancers	Brain Angular Gyrus	brain
34	chr15:78609000-78609800	Enhancers	Brain Inferior Temporal Lobe	brain
35	chr15:78609400-78609800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
36	chr15:78609400-78609800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
37	chr15:78609400-78611400	Weak transcription	GM12878-XiMat	blood
38	chr15:78609400-78614200	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr15:78609600-78609800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
40	chr15:78609600-78609800	Active TSS	Duodenum Mucosa	Duodenum
41	chr15:78609600-78610600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr15:78609600-78610800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr15:78609600-78613600	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr15:78609600-78613800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr15:78609600-78614000	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr15:78609600-78614200	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr15:78609600-78614400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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