Variant report

Variant	rs56277127
Chromosome Location	chr4:68762647-68762648
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1978914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28469855	1.00[AMR][1000 genomes]
rs55647417	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55791373	1.00[AMR][1000 genomes]
rs55897196	1.00[AMR][1000 genomes]
rs56056412	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56716433	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58319413	1.00[AMR][1000 genomes]
rs60436702	1.00[AMR][1000 genomes]
rs61371930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61590834	1.00[AMR][1000 genomes]
rs61641677	1.00[AMR][1000 genomes]
rs7356436	1.00[AMR][1000 genomes]
rs73823253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73823254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73823256	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73823383	1.00[AMR][1000 genomes]
rs73823394	1.00[AMR][1000 genomes]
rs73825314	1.00[AMR][1000 genomes]
rs73825330	1.00[AMR][1000 genomes]
rs73825332	1.00[AMR][1000 genomes]
rs73825333	1.00[AMR][1000 genomes]
rs73825334	1.00[AMR][1000 genomes]
rs73825365	1.00[AMR][1000 genomes]
rs73825368	1.00[AMR][1000 genomes]
rs73825370	1.00[AMR][1000 genomes]
rs73825372	1.00[AMR][1000 genomes]
rs73825604	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73825607	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73829936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9994519	1.00[AMR][1000 genomes]
rs9995806	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879214	chr4:68389841-68789778	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv829960	chr4:68649237-68809629	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1007376	chr4:68693483-69008202	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	esv1811886	chr4:68725776-68780041	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv879219	chr4:68743032-69028913	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv10513	chr4:68758071-68774546	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:68761600-68762800	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
2	chr4:68762000-68762800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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