Variant report

Variant	rs562783326
Chromosome Location	chr3:56608845-56608846
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347557	chr3:56466500-56619322	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv876817	chr3:56517253-56649282	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv460557	chr3:56594735-56661320	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv590362	chr3:56594735-56661320	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv822097	chr3:56607112-56620842	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv435762	chr3:56607518-56622066	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv19690	chr3:56607723-56621531	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv822099	chr3:56607804-56620842	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv1827962	chr3:56607811-56617333	Weak transcription Active TSS ZNF genes & repeats Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv1830828	chr3:56607811-56617333	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv1832534	chr3:56607811-56617333	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Active TSS Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv1831026	chr3:56607811-56620106	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv1832365	chr3:56607811-56620106	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv1826366	chr3:56607826-56620842	ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	esv1830577	chr3:56607826-56620842	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv963260	chr3:56608026-56620152	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	esv1825009	chr3:56608033-56609469	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	esv1831830	chr3:56608033-56609469	Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	esv1825630	chr3:56608033-56620106	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Active TSS Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	esv1827186	chr3:56608033-56620106	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
21	esv1827416	chr3:56608033-56620106	Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
22	nsv528087	chr3:56608033-56628031	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
23	esv1830059	chr3:56608467-56609469	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56592000-56615600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:56592200-56609400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:56592400-56615600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:56592400-56639800	Weak transcription	Right Ventricle	heart
5	chr3:56592400-56644800	Weak transcription	Small Intestine	intestine
6	chr3:56592800-56610200	Strong transcription	HUES48 Cell Line	embryonic stem cell
7	chr3:56592800-56644600	Weak transcription	Fetal Heart	heart
8	chr3:56593000-56610000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr3:56593200-56609000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
10	chr3:56593200-56609600	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr3:56593200-56616400	Weak transcription	Colon Smooth Muscle	Colon
12	chr3:56593600-56609800	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr3:56594200-56610200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr3:56594400-56609400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr3:56594800-56609000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr3:56597200-56609200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr3:56597400-56609400	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr3:56597400-56610000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr3:56598000-56609200	Strong transcription	Fetal Thymus	thymus
20	chr3:56598000-56609800	Strong transcription	Primary T cells from cord blood	blood
21	chr3:56598600-56609600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr3:56600000-56609000	Strong transcription	Adipose Nuclei	Adipose
23	chr3:56600200-56609600	Strong transcription	Duodenum Smooth Muscle	Duodenum
24	chr3:56600600-56640000	Weak transcription	NHLF	lung
25	chr3:56601800-56615800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr3:56602000-56609400	Strong transcription	Brain Hippocampus Middle	brain
27	chr3:56602400-56616200	Weak transcription	Dnd41	blood
28	chr3:56603000-56631600	Weak transcription	Fetal Brain Male	brain
29	chr3:56603200-56616600	Weak transcription	GM12878-XiMat	blood
30	chr3:56603200-56650400	Weak transcription	K562	blood
31	chr3:56603400-56610000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr3:56603600-56612200	Weak transcription	Rectal Smooth Muscle	rectum
33	chr3:56603600-56615800	Weak transcription	Gastric	stomach
34	chr3:56603600-56640000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr3:56603800-56615600	Weak transcription	Brain Germinal Matrix	brain
36	chr3:56604200-56615600	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr3:56604200-56627600	Weak transcription	Brain Angular Gyrus	brain
38	chr3:56604600-56615800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr3:56604600-56624600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr3:56604600-56625000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr3:56604600-56625800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr3:56604600-56627600	Weak transcription	HUVEC	blood vessel
43	chr3:56604800-56609600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr3:56605400-56610000	Strong transcription	HSMM	muscle
45	chr3:56605600-56609000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr3:56605600-56639600	Weak transcription	Pancreas	Pancrea
47	chr3:56605800-56615400	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr3:56605800-56639400	Weak transcription	Spleen	Spleen
49	chr3:56605800-56639600	Weak transcription	Esophagus	oesophagus
50	chr3:56606000-56611800	Weak transcription	Fetal Stomach	stomach

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