The 2.0 version of rSNPBase

Variant report

Variant rs562798558
Chromosome Location chr19:38451967-38451968
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:38425000-38454000 Weak transcription HSMMtube muscle
2 chr19:38430600-38453600 Weak transcription Aorta Aorta
3 chr19:38438400-38455600 Enhancers Primary B cells from peripheral blood blood
4 chr19:38439600-38453000 Weak transcription Gastric stomach
5 chr19:38441400-38456800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
6 chr19:38444000-38453200 Weak transcription Pancreas Pancrea
7 chr19:38444200-38453800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
8 chr19:38444600-38453600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
9 chr19:38444600-38456800 Weak transcription Colonic Mucosa Colon
10 chr19:38445200-38452000 Weak transcription NH-A brain
11 chr19:38445200-38453200 Weak transcription Breast Myoepithelial Primary Cells Breast
12 chr19:38445200-38453200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
13 chr19:38445200-38456400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
14 chr19:38445200-38456400 Weak transcription iPS-18 Cell Line embryonic stem cell
15 chr19:38445400-38457000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
16 chr19:38445600-38453200 Weak transcription Fetal Intestine Large intestine
17 chr19:38446400-38456600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
18 chr19:38447000-38452200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
19 chr19:38447000-38453200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
20 chr19:38448000-38453200 Weak transcription Stomach Mucosa stomach
21 chr19:38449800-38456800 Weak transcription iPS-20b Cell Line embryonic stem cell
22 chr19:38450000-38452000 Weak transcription HUVEC blood vessel
23 chr19:38450200-38453200 Weak transcription Sigmoid Colon Sigmoid Colon
24 chr19:38450400-38452000 Weak transcription NHDF-Ad bronchial
25 chr19:38450400-38453200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
26 chr19:38450600-38453200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
27 chr19:38450800-38452000 Weak transcription Muscle Satellite Cultured Cells --
28 chr19:38450800-38452200 Weak transcription Osteobl bone
29 chr19:38451000-38452000 Enhancers GM12878-XiMat blood
30 chr19:38451000-38452200 Weak transcription HSMM muscle
31 chr19:38451000-38453200 Weak transcription Duodenum Mucosa Duodenum
32 chr19:38451000-38453200 Weak transcription Rectal Mucosa Donor 29 rectum
33 chr19:38451000-38453200 Weak transcription Rectal Mucosa Donor 31 rectum
34 chr19:38451000-38454000 Weak transcription Ovary ovary
35 chr19:38451400-38452000 ZNF genes & repeats Fetal Intestine Small intestine
36 chr19:38451600-38452200 ZNF genes & repeats H1 Derived Mesenchymal Stem Cells ES cell derived
37 chr19:38451800-38452000 Weak transcription Primary B cells from cord blood blood
38 chr19:38451800-38452000 ZNF genes & repeats Foreskin Melanocyte Primary Cells skin03 Skin
39 chr19:38451800-38452200 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
40 chr19:38451800-38452400 ZNF genes & repeats Primary T cells from cord blood blood
41 chr19:38451800-38452400 ZNF genes & repeats A549 lung

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Last update: Aug 31, 2015