Variant report

Variant	rs562801827
Chromosome Location	chr1:158901160-158901161
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr1:158901093-158901596	HL-60	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:158900682..158902203-chr1:158976628..158979178,2	K562	blood:

Variant related genes	Relation type
PYHIN1	TF binding region
ENSG00000163565	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002401	chr1:158712627-158972031	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv3376764	chr1:158761947-158998617	Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv872484	chr1:158863845-158909164	Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv872485	chr1:158863845-158922287	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1007597	chr1:158874806-158934301	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv525964	chr1:158901127-158902344	Active TSS Weak transcription Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv518819	chr1:158901127-158903252	Active TSS Flanking Active TSS Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158899800-158901200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
2	chr1:158899800-158901400	Enhancers	Primary B cells from peripheral blood	blood
3	chr1:158899800-158901400	Enhancers	Dnd41	blood
4	chr1:158900000-158904600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr1:158900200-158901400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr1:158900400-158901600	Flanking Active TSS	Primary T cells from cord blood	blood
7	chr1:158900600-158901200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
8	chr1:158900600-158901400	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
9	chr1:158900600-158902200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
10	chr1:158900600-158904400	Active TSS	Primary T cells fromperipheralblood	blood
11	chr1:158900600-158904400	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
12	chr1:158900800-158901400	Weak transcription	Fetal Thymus	thymus
13	chr1:158900800-158903800	Active TSS	Primary T killer memory cells from peripheral blood	blood
14	chr1:158901000-158901200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
15	chr1:158901000-158901800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr1:158901000-158902200	Active TSS	Rectal Mucosa Donor 31	rectum
17	chr1:158901000-158902800	Active TSS	Rectal Mucosa Donor 29	rectum
18	chr1:158901000-158903800	Active TSS	Primary B cells from cord blood	blood
19	chr1:158901000-158903800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
20	chr1:158901000-158903800	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
21	chr1:158901000-158904000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
22	chr1:158901000-158904200	Active TSS	Primary T helper cells PMA-I stimulated	--

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